Variant report

Variant	rs57765682
Chromosome Location	chr1:95564509-95564510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs57591007	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58056748	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58810066	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60433630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61211591	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61231950	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6593664	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72720237	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72720240	0.84[AMR][1000 genomes]
rs72720242	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72720244	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72720246	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72720251	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72720252	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72720259	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95561000-95565000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr1:95563200-95566600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr1:95563600-95567800	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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