The 2.0 version of rSNPBase

Variant report

Variant rs72720240
Chromosome Location chr1:95484133-95484134
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95447000-95490800 Weak transcription Fetal Intestine Large intestine
2 chr1:95448200-95491000 Weak transcription Primary B cells from cord blood blood
3 chr1:95469200-95487200 Weak transcription Small Intestine intestine
4 chr1:95476000-95490800 Weak transcription Primary T cells from cord blood blood
5 chr1:95478800-95485600 Enhancers HepG2 liver
6 chr1:95479400-95485000 Enhancers Cortex derived primary cultured neurospheres brain
7 chr1:95479800-95484400 Weak transcription Hela-S3 cervix
8 chr1:95480000-95484200 Weak transcription Muscle Satellite Cultured Cells --
9 chr1:95480000-95484200 Weak transcription A549 lung
10 chr1:95480000-95487000 Weak transcription Brain Angular Gyrus brain
11 chr1:95480000-95508800 Weak transcription Skeletal Muscle Female skeletal muscle
12 chr1:95480200-95484400 Weak transcription Fetal Kidney kidney
13 chr1:95480200-95487000 Weak transcription HUVEC blood vessel
14 chr1:95480200-95487200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr1:95480200-95487200 Weak transcription Ovary ovary
16 chr1:95480200-95490600 Weak transcription Liver Liver
17 chr1:95480600-95487200 Weak transcription Pancreatic Islets Pancreatic Islet
18 chr1:95480600-95487800 Weak transcription Skeletal Muscle Male skeletal muscle
19 chr1:95480600-95488000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
20 chr1:95480600-95491400 Weak transcription Fetal Intestine Small intestine
21 chr1:95480800-95484200 Weak transcription Fetal Stomach stomach
22 chr1:95480800-95484400 Weak transcription Adipose Nuclei Adipose
23 chr1:95480800-95490800 Weak transcription Left Ventricle heart
24 chr1:95481000-95484400 Enhancers Breast Myoepithelial Primary Cells Breast
25 chr1:95481000-95487000 Weak transcription Fetal Brain Male brain
26 chr1:95481200-95484800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
27 chr1:95481400-95484600 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr1:95481400-95486600 Weak transcription Brain Anterior Caudate brain
29 chr1:95481400-95486800 Weak transcription Brain Hippocampus Middle brain
30 chr1:95481800-95486600 Weak transcription Colon Smooth Muscle Colon
31 chr1:95482400-95487400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
32 chr1:95482800-95485200 Enhancers HSMMtube muscle
33 chr1:95483000-95487000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
34 chr1:95483400-95485000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr1:95483400-95485000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr1:95483400-95485000 Enhancers Stomach Mucosa stomach
37 chr1:95483400-95485200 Enhancers NHLF lung
38 chr1:95483400-95487400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
39 chr1:95483600-95484200 Enhancers iPS-20b Cell Line embryonic stem cell
40 chr1:95483600-95484800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr1:95483600-95485200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr1:95483800-95484200 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
43 chr1:95483800-95484200 Weak transcription Fetal Muscle Leg muscle
44 chr1:95484000-95484600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
45 chr1:95484000-95484600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr1:95484000-95484600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
47 chr1:95484000-95484600 Enhancers Placenta Placenta
48 chr1:95484000-95484800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
49 chr1:95484000-95484800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr1:95484000-95484800 Enhancers Rectal Mucosa Donor 31 rectum

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Last update: Aug 31, 2015