Variant report

Variant	rs72720244
Chromosome Location	chr1:95488088-95488089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95457235..95459150-chr1:95488064..95489902,2	MCF-7	breast:
2	chr1:95487503..95489480-chr1:95499680..95501424,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs57591007	0.90[AMR][1000 genomes]
rs57765682	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58056748	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58810066	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60433630	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61211591	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61231950	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6593664	0.83[EUR][1000 genomes]
rs72720237	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72720240	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72720242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72720246	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72720251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72720252	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72720259	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95447000-95490800	Weak transcription	Fetal Intestine Large	intestine
2	chr1:95448200-95491000	Weak transcription	Primary B cells from cord blood	blood
3	chr1:95476000-95490800	Weak transcription	Primary T cells from cord blood	blood
4	chr1:95480000-95508800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr1:95480200-95490600	Weak transcription	Liver	Liver
6	chr1:95480600-95491400	Weak transcription	Fetal Intestine Small	intestine
7	chr1:95480800-95490800	Weak transcription	Left Ventricle	heart
8	chr1:95484000-95491000	Weak transcription	Psoas Muscle	Psoas
9	chr1:95484200-95488800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:95484600-95489000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:95484600-95491000	Weak transcription	Thymus	Thymus
12	chr1:95484600-95495000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:95484800-95489400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr1:95484800-95490000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:95484800-95491600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr1:95484800-95494600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr1:95485000-95500400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr1:95485200-95507000	Weak transcription	Fetal Heart	heart
19	chr1:95486400-95488800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr1:95486400-95489600	Enhancers	HMEC	breast
21	chr1:95486400-95490400	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr1:95486600-95488200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr1:95486600-95488200	Enhancers	Fetal Stomach	stomach
24	chr1:95486600-95489200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:95486600-95494600	Weak transcription	HepG2	liver
26	chr1:95486800-95488200	Flanking Active TSS	Osteobl	bone
27	chr1:95487000-95488200	Flanking Active TSS	Rectal Smooth Muscle	rectum
28	chr1:95487000-95488200	Enhancers	Stomach Mucosa	stomach
29	chr1:95487000-95488400	Enhancers	Fetal Brain Female	brain
30	chr1:95487000-95488800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr1:95487000-95489800	Enhancers	HUVEC	blood vessel
32	chr1:95487200-95488200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr1:95487200-95488200	Flanking Active TSS	Brain Hippocampus Middle	brain
34	chr1:95487200-95488200	Enhancers	Pancreas	Pancrea
35	chr1:95487200-95488200	Active TSS	Rectal Mucosa Donor 29	rectum
36	chr1:95487200-95488200	Enhancers	Right Atrium	heart
37	chr1:95487200-95488200	Flanking Active TSS	HSMM	muscle
38	chr1:95487200-95488800	Enhancers	Small Intestine	intestine
39	chr1:95487400-95488200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
40	chr1:95487400-95489000	Weak transcription	NHEK	skin
41	chr1:95487400-95494600	Weak transcription	Esophagus	oesophagus
42	chr1:95487600-95488200	Flanking Active TSS	HSMMtube	muscle
43	chr1:95487600-95489400	Weak transcription	A549	lung
44	chr1:95487600-95490800	Weak transcription	Brain Germinal Matrix	brain
45	chr1:95487800-95488200	Enhancers	Right Ventricle	heart
46	chr1:95487800-95488200	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr1:95487800-95488200	Flanking Active TSS	Stomach Smooth Muscle	stomach
48	chr1:95487800-95488600	Enhancers	Colon Smooth Muscle	Colon
49	chr1:95487800-95488800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr1:95487800-95489000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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