Variant report

Variant	rs660393
Chromosome Location	chr2:32281509-32281510
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:32267639..32269819-chr2:32281409..32283297,2	K562	blood:
2	chr2:32263283..32265149-chr2:32280989..32282842,2	K562	blood:
3	chr2:32279070..32283025-chr2:32287141..32290986,4	MCF-7	breast:
4	chr2:32277442..32284855-chr2:32286195..32291161,9	K562	blood:
5	chr2:32280784..32284194-chr2:32288641..32290892,4	K562	blood:

Variant related genes	Relation type
ENSG00000162961	Chromatin interaction
ENSG00000021574	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10490360	0.85[ASN][1000 genomes]
rs11124274	0.86[ASN][1000 genomes]
rs11124275	0.84[ASN][1000 genomes]
rs11124276	0.80[ASN][1000 genomes]
rs11676938	0.81[ASN][1000 genomes]
rs11683931	0.83[ASN][1000 genomes]
rs12620922	0.82[ASN][1000 genomes]
rs12989936	0.87[ASN][1000 genomes]
rs12992743	0.84[ASN][1000 genomes]
rs13000753	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13017189	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13024004	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13029752	0.85[ASN][1000 genomes]
rs13033833	0.83[ASN][1000 genomes]
rs17767988	0.87[ASN][1000 genomes]
rs216538	0.84[ASN][1000 genomes]
rs2280967	0.88[ASN][1000 genomes]
rs2280969	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2365555	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34856365	0.84[ASN][1000 genomes]
rs35650265	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs36014814	0.84[ASN][1000 genomes]
rs3769606	0.81[ASN][1000 genomes]
rs467523	0.85[ASN][1000 genomes]
rs56740303	0.84[ASN][1000 genomes]
rs6543647	0.85[ASN][1000 genomes]
rs67157050	0.88[ASN][1000 genomes]
rs6737500	0.85[ASN][1000 genomes]
rs6747488	0.82[ASN][1000 genomes]
rs6748621	0.85[ASN][1000 genomes]
rs6749336	0.86[ASN][1000 genomes]
rs6752375	0.82[ASN][1000 genomes]
rs6758024	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6760105	0.83[ASN][1000 genomes]
rs678251	0.85[ASN][1000 genomes]
rs72862234	0.88[ASN][1000 genomes]
rs7370704	0.83[ASN][1000 genomes]
rs7561519	0.82[ASN][1000 genomes]
rs7575139	0.88[ASN][1000 genomes]
rs7577408	0.83[ASN][1000 genomes]
rs7577696	0.88[ASN][1000 genomes]
rs7586448	0.87[ASN][1000 genomes]
rs7600173	0.88[ASN][1000 genomes]
rs7600885	0.87[ASN][1000 genomes]
rs7601267	0.88[ASN][1000 genomes]
rs7604559	0.87[ASN][1000 genomes]
rs7608127	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7608229	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32275800-32287000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:32278400-32283000	Weak transcription	HepG2	liver
3	chr2:32281400-32282800	Weak transcription	K562	blood

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