Variant report

Variant	rs7604559
Chromosome Location	chr2:32273202-32273203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:32263814..32266413-chr2:32269096..32273367,3	MCF-7	breast:
2	chr2:32271373..32274360-chr2:32283012..32285259,2	K562	blood:

Variant related genes	Relation type
ENSG00000162961	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10490360	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11124274	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11124275	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11124276	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11124277	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11676938	0.91[ASN][1000 genomes]
rs11681731	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11683931	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11686061	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11691879	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12465124	0.84[ASN][1000 genomes]
rs12474443	0.84[ASN][1000 genomes]
rs12611678	0.82[ASN][1000 genomes]
rs12617289	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12617290	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12618002	0.81[ASN][1000 genomes]
rs12620922	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12989936	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12992743	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13000753	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13007972	0.82[ASN][1000 genomes]
rs13008192	0.82[ASN][1000 genomes]
rs13017189	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13022197	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13024004	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13029752	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13033833	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13431540	0.82[ASN][1000 genomes]
rs17767988	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1904489	0.80[ASN][1000 genomes]
rs216538	0.93[ASN][1000 genomes]
rs216544	0.89[ASN][1000 genomes]
rs2235134	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2280967	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2280969	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2294179	0.82[ASN][1000 genomes]
rs2365555	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2365558	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34856365	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35650265	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36014814	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3752916	0.82[ASN][1000 genomes]
rs3769604	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3769606	0.91[ASN][1000 genomes]
rs454119	0.91[ASN][1000 genomes]
rs467523	0.95[ASN][1000 genomes]
rs469305	0.81[ASN][1000 genomes]
rs4952247	0.80[EUR][1000 genomes]
rs4952249	0.82[ASN][1000 genomes]
rs4952250	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56208031	0.81[ASN][1000 genomes]
rs56740303	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62142080	0.81[ASN][1000 genomes]
rs6543647	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6543649	0.80[EUR][1000 genomes]
rs660393	0.87[ASN][1000 genomes]
rs67157050	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6737500	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6738349	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6747488	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6748621	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6749336	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6752375	0.91[ASN][1000 genomes]
rs6758024	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6760105	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6761417	0.81[ASN][1000 genomes]
rs678251	0.92[ASN][1000 genomes]
rs72862234	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7370704	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7559964	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7561519	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7566162	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7573543	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7575139	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7577408	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7577696	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7581032	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7581340	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7586448	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7600173	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7600885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7601267	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7605242	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7608127	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7608229	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9677104	0.81[ASN][1000 genomes]
rs9750659	0.82[ASN][1000 genomes]
rs9752631	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32273200-32273800	Active TSS	HepG2	liver

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