Variant report

Variant	rs7370704
Chromosome Location	chr2:32257717-32257718
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:32246000..32248310-chr2:32255311..32257726,2	K562	blood:
2	chr2:32256836..32258685-chr2:32259197..32262028,2	MCF-7	breast:
3	chr2:32256593..32258983-chr2:32264905..32266579,2	K562	blood:
4	chr2:32256932..32260503-chr2:32262811..32264863,3	K562	blood:
5	chr2:32256918..32259058-chr2:32288726..32291089,2	K562	blood:

Variant related genes	Relation type
ENSG00000021574	Chromatin interaction
ENSG00000162961	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10439444	0.81[ASN][1000 genomes]
rs10490360	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11124274	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11124275	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11124276	0.87[ASN][1000 genomes]
rs11124277	0.84[ASN][1000 genomes]
rs11676938	0.90[ASN][1000 genomes]
rs11683931	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11686061	0.84[ASN][1000 genomes]
rs11691879	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12465124	0.82[ASN][1000 genomes]
rs12474443	0.83[ASN][1000 genomes]
rs12611678	0.80[ASN][1000 genomes]
rs12617289	0.81[ASN][1000 genomes]
rs12617290	0.81[ASN][1000 genomes]
rs12620922	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1272585	0.81[ASN][1000 genomes]
rs12989936	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12992743	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13000753	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13017189	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13022197	0.81[ASN][1000 genomes]
rs13024004	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13029752	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13033833	0.83[ASN][1000 genomes]
rs13431540	0.81[ASN][1000 genomes]
rs160801	0.80[ASN][1000 genomes]
rs17767988	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1904489	0.81[ASN][1000 genomes]
rs216538	0.89[ASN][1000 genomes]
rs216544	0.88[ASN][1000 genomes]
rs2235134	0.86[ASN][1000 genomes]
rs2280967	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2280969	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2294179	0.80[ASN][1000 genomes]
rs2365555	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2365558	0.83[ASN][1000 genomes]
rs34856365	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35650265	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36014814	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3752916	0.80[ASN][1000 genomes]
rs3769604	0.87[ASN][1000 genomes]
rs3769606	0.90[ASN][1000 genomes]
rs454119	0.84[ASN][1000 genomes]
rs467523	0.90[ASN][1000 genomes]
rs4952250	0.81[ASN][1000 genomes]
rs55730514	0.81[ASN][1000 genomes]
rs56740303	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62142080	0.82[ASN][1000 genomes]
rs6543647	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs660393	0.83[ASN][1000 genomes]
rs67157050	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6737500	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6738349	0.84[ASN][1000 genomes]
rs6747488	0.91[ASN][1000 genomes]
rs6748621	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6749336	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6752375	0.97[ASN][1000 genomes]
rs6758024	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6760105	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs678251	0.96[ASN][1000 genomes]
rs72862234	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7561519	0.91[ASN][1000 genomes]
rs7566162	0.86[ASN][1000 genomes]
rs7573543	0.80[ASN][1000 genomes]
rs7575139	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7577408	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7577696	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7581032	0.83[ASN][1000 genomes]
rs7581340	0.83[ASN][1000 genomes]
rs7586448	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7600173	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7600885	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7601267	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7604559	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7605242	0.86[ASN][1000 genomes]
rs7608127	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7608229	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9750659	0.80[ASN][1000 genomes]
rs9752631	0.84[ASN][1000 genomes]
rs9752651	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32236400-32264200	Weak transcription	Gastric	stomach
2	chr2:32236600-32261000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:32236600-32263200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:32236600-32263800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:32236600-32263800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr2:32236600-32263800	Weak transcription	Psoas Muscle	Psoas
7	chr2:32236600-32264200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:32236600-32264200	Weak transcription	Right Atrium	heart
9	chr2:32236600-32264200	Weak transcription	Right Ventricle	heart
10	chr2:32236800-32258800	Weak transcription	Fetal Kidney	kidney
11	chr2:32236800-32263000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr2:32236800-32263800	Weak transcription	Small Intestine	intestine
13	chr2:32236800-32264000	Weak transcription	Brain Angular Gyrus	brain
14	chr2:32236800-32264000	Weak transcription	Fetal Heart	heart
15	chr2:32236800-32264000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr2:32236800-32264000	Weak transcription	HSMMtube	muscle
17	chr2:32237000-32259600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr2:32237000-32262000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr2:32237000-32263600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr2:32237000-32263800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr2:32237000-32263800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr2:32237400-32264000	Weak transcription	GM12878-XiMat	blood
23	chr2:32238800-32258800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr2:32240800-32260200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr2:32243400-32259200	Weak transcription	Hela-S3	cervix
26	chr2:32244600-32263600	Weak transcription	NHEK	skin
27	chr2:32245600-32264200	Weak transcription	Aorta	Aorta
28	chr2:32246000-32263200	Weak transcription	Pancreas	Pancrea
29	chr2:32248400-32258800	Weak transcription	Brain Anterior Caudate	brain
30	chr2:32248600-32263800	Weak transcription	Brain Hippocampus Middle	brain
31	chr2:32248800-32259000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr2:32248800-32259400	Weak transcription	Ovary	ovary
33	chr2:32248800-32264000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr2:32249200-32258800	Weak transcription	Brain Substantia Nigra	brain
35	chr2:32249200-32263400	Weak transcription	Fetal Brain Male	brain
36	chr2:32249200-32263800	Weak transcription	NHLF	lung
37	chr2:32249400-32258800	Weak transcription	Primary T cells from cord blood	blood
38	chr2:32249800-32258800	Weak transcription	HMEC	breast
39	chr2:32249800-32263800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr2:32249800-32263800	Weak transcription	Colon Smooth Muscle	Colon
41	chr2:32249800-32264000	Weak transcription	NHDF-Ad	bronchial
42	chr2:32250000-32258800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr2:32250000-32258800	Weak transcription	K562	blood
44	chr2:32250400-32259400	Weak transcription	Fetal Lung	lung
45	chr2:32250400-32264000	Weak transcription	A549	lung
46	chr2:32251200-32258800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr2:32251600-32264000	Weak transcription	Colonic Mucosa	Colon
48	chr2:32251800-32259000	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr2:32251800-32259000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr2:32251800-32259200	Weak transcription	NH-A	brain

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