Variant report

Variant	rs6667676
Chromosome Location	chr1:95421315-95421316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95420137..95422269-chr1:95458880..95460742,2	MCF-7	breast:
2	chr1:95421294..95422919-chr1:95433531..95435753,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10874898	0.98[ASN][1000 genomes]
rs10874899	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11165278	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1887094	0.85[ASN][1000 genomes]
rs6658856	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6698310	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6701778	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6704409	0.83[AFR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6667676	FNBP1L	cis	cerebellum	SCAN
rs6667676	FNBP1L	cis	parietal	SCAN

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95404200-95421400	Weak transcription	Aorta	Aorta
2	chr1:95410600-95421600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:95413200-95427600	Weak transcription	Colonic Mucosa	Colon
4	chr1:95415400-95422400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr1:95415800-95428400	Weak transcription	Lung	lung
6	chr1:95416000-95421400	Weak transcription	Stomach Mucosa	stomach
7	chr1:95416000-95427400	Weak transcription	A549	lung
8	chr1:95417600-95421400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:95417800-95421400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:95417800-95424600	Enhancers	HepG2	liver
11	chr1:95418800-95421800	Enhancers	Ovary	ovary
12	chr1:95419200-95421800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:95419200-95422000	Enhancers	Fetal Stomach	stomach
14	chr1:95419400-95421800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr1:95419400-95421800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr1:95419400-95421800	Enhancers	Fetal Muscle Leg	muscle
17	chr1:95419400-95421800	Enhancers	Left Ventricle	heart
18	chr1:95419400-95421800	Enhancers	Stomach Smooth Muscle	stomach
19	chr1:95419400-95422000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:95419400-95422000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr1:95419400-95422000	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr1:95419400-95422000	Enhancers	Colon Smooth Muscle	Colon
23	chr1:95419400-95422000	Enhancers	Rectal Smooth Muscle	rectum
24	chr1:95419400-95422000	Enhancers	HUVEC	blood vessel
25	chr1:95419400-95422400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr1:95419400-95422800	Enhancers	Duodenum Mucosa	Duodenum
27	chr1:95419600-95421600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr1:95419600-95423200	Weak transcription	Dnd41	blood
29	chr1:95419800-95421600	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr1:95419800-95421800	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr1:95419800-95422000	Enhancers	Fetal Intestine Small	intestine
32	chr1:95420000-95421800	Enhancers	Adipose Nuclei	Adipose
33	chr1:95420000-95421800	Enhancers	Right Atrium	heart
34	chr1:95420000-95421800	Enhancers	Right Ventricle	heart
35	chr1:95420000-95422000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr1:95420000-95422000	Enhancers	Rectal Mucosa Donor 29	rectum
37	chr1:95420200-95421600	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr1:95420400-95421400	Weak transcription	Fetal Kidney	kidney
39	chr1:95420400-95421400	Weak transcription	Fetal Lung	lung
40	chr1:95420400-95421400	Weak transcription	NHLF	lung
41	chr1:95420400-95422800	Enhancers	Liver	Liver
42	chr1:95420400-95423000	Enhancers	Fetal Heart	heart
43	chr1:95420400-95424000	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr1:95420600-95421400	Weak transcription	Brain Hippocampus Middle	brain
45	chr1:95420800-95421400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr1:95420800-95421400	Weak transcription	Spleen	Spleen
47	chr1:95420800-95421600	Enhancers	Fetal Muscle Trunk	muscle
48	chr1:95420800-95426000	Weak transcription	Placenta	Placenta
49	chr1:95421000-95421400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr1:95421000-95421600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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