Variant report

Variant	rs6701778
Chromosome Location	chr1:95420482-95420483
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95420137..95422269-chr1:95458880..95460742,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10874898	0.99[ASN][1000 genomes]
rs10874899	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11165278	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1887094	0.86[ASN][1000 genomes]
rs6658856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6667676	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6698310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95404200-95421400	Weak transcription	Aorta	Aorta
2	chr1:95410600-95421600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:95413200-95427600	Weak transcription	Colonic Mucosa	Colon
4	chr1:95413400-95421000	Weak transcription	Pancreas	Pancrea
5	chr1:95415400-95422400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr1:95415800-95421200	Weak transcription	Esophagus	oesophagus
7	chr1:95415800-95421200	Weak transcription	HSMMtube	muscle
8	chr1:95415800-95428400	Weak transcription	Lung	lung
9	chr1:95416000-95421200	Weak transcription	Small Intestine	intestine
10	chr1:95416000-95421400	Weak transcription	Stomach Mucosa	stomach
11	chr1:95416000-95427400	Weak transcription	A549	lung
12	chr1:95416200-95421000	Weak transcription	Fetal Intestine Large	intestine
13	chr1:95416200-95421200	Weak transcription	Fetal Thymus	thymus
14	chr1:95416800-95420800	Enhancers	Placenta	Placenta
15	chr1:95417200-95420800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr1:95417600-95421200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:95417600-95421200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr1:95417600-95421200	Weak transcription	NHDF-Ad	bronchial
19	chr1:95417600-95421400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr1:95417800-95421400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:95417800-95424600	Enhancers	HepG2	liver
22	chr1:95418800-95421800	Enhancers	Ovary	ovary
23	chr1:95419200-95420600	Enhancers	Placenta Amnion	Placenta Amnion
24	chr1:95419200-95421800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr1:95419200-95422000	Enhancers	Fetal Stomach	stomach
26	chr1:95419400-95420600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr1:95419400-95420800	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr1:95419400-95420800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:95419400-95420800	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr1:95419400-95421800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr1:95419400-95421800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr1:95419400-95421800	Enhancers	Fetal Muscle Leg	muscle
33	chr1:95419400-95421800	Enhancers	Left Ventricle	heart
34	chr1:95419400-95421800	Enhancers	Stomach Smooth Muscle	stomach
35	chr1:95419400-95422000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr1:95419400-95422000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr1:95419400-95422000	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr1:95419400-95422000	Enhancers	Colon Smooth Muscle	Colon
39	chr1:95419400-95422000	Enhancers	Rectal Smooth Muscle	rectum
40	chr1:95419400-95422000	Enhancers	HUVEC	blood vessel
41	chr1:95419400-95422400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr1:95419400-95422800	Enhancers	Duodenum Mucosa	Duodenum
43	chr1:95419600-95420800	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr1:95419600-95421600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr1:95419600-95423200	Weak transcription	Dnd41	blood
46	chr1:95419800-95420600	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr1:95419800-95420800	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr1:95419800-95421000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr1:95419800-95421200	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr1:95419800-95421600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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