Variant report

Variant	rs6670651
Chromosome Location	chr1:56362011-56362012
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs4255418	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4406678	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4506503	1.00[AMR][1000 genomes]
rs55805972	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56362704	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57782086	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58572119	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59647629	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60176740	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60384077	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6656739	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6665123	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6670261	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6670667	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6678585	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6681550	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6686957	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6690389	0.81[AFR][1000 genomes]
rs74072548	0.81[AFR][1000 genomes]
rs74072549	0.81[AFR][1000 genomes]
rs74072551	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072553	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072554	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072559	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072560	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072561	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072562	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072563	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072564	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072565	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072583	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7517483	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7541355	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56360000-56364000	Weak transcription	A549	lung
2	chr1:56360400-56363600	Weak transcription	NHDF-Ad	bronchial
3	chr1:56360600-56363600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr1:56360800-56363600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:56360800-56363600	Weak transcription	Osteobl	bone
6	chr1:56361600-56363400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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