Variant report

Variant	rs59647629
Chromosome Location	chr1:56360121-56360122
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs17113005	0.86[AFR][1000 genomes]
rs4255418	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4406678	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4506503	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55805972	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55849921	0.86[AFR][1000 genomes]
rs56362704	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57782086	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58572119	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60176740	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60384077	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6656739	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6665123	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6668334	0.87[AFR][1000 genomes]
rs6670261	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6670651	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6670667	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6678585	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6681550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6686957	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6690389	0.89[AFR][1000 genomes]
rs74072547	0.87[AFR][1000 genomes]
rs74072548	0.89[AFR][1000 genomes]
rs74072549	0.89[AFR][1000 genomes]
rs74072551	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072553	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072554	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072559	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072560	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072561	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072562	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072563	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072564	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072583	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072584	0.82[AFR][1000 genomes]
rs7517483	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7541355	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
2	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56359400-56361600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:56359800-56360800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:56360000-56360400	Enhancers	NHDF-Ad	bronchial
4	chr1:56360000-56360800	Enhancers	Osteobl	bone
5	chr1:56360000-56364000	Weak transcription	A549	lung

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