Variant report

Variant	rs55849921
Chromosome Location	chr1:56367027-56367028
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10493188	1.00[AMR][1000 genomes]
rs17113005	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4255418	0.91[AFR][1000 genomes]
rs4406678	0.91[AFR][1000 genomes]
rs4506503	0.87[AFR][1000 genomes]
rs55805972	0.91[AFR][1000 genomes]
rs56362704	0.87[AFR][1000 genomes]
rs57782086	0.91[AFR][1000 genomes]
rs58572119	0.91[AFR][1000 genomes]
rs59439199	1.00[AMR][1000 genomes]
rs59647629	0.86[AFR][1000 genomes]
rs60030344	1.00[AMR][1000 genomes]
rs60176740	0.94[AFR][1000 genomes]
rs60368363	1.00[AMR][1000 genomes]
rs60384077	0.91[AFR][1000 genomes]
rs61508861	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6656739	0.87[AFR][1000 genomes]
rs6665123	0.87[AFR][1000 genomes]
rs6668334	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6670261	0.87[AFR][1000 genomes]
rs6670667	0.87[AFR][1000 genomes]
rs6678585	0.86[AFR][1000 genomes]
rs6681550	0.86[AFR][1000 genomes]
rs6686957	0.94[AFR][1000 genomes]
rs6690389	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072547	0.87[AFR][1000 genomes]
rs74072548	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072549	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072551	0.87[AFR][1000 genomes]
rs74072553	0.87[AFR][1000 genomes]
rs74072554	0.84[AFR][1000 genomes]
rs74072559	0.84[AFR][1000 genomes]
rs74072560	0.87[AFR][1000 genomes]
rs74072561	0.87[AFR][1000 genomes]
rs74072562	0.87[AFR][1000 genomes]
rs74072563	0.87[AFR][1000 genomes]
rs74072564	0.87[AFR][1000 genomes]
rs74072565	0.86[AFR][1000 genomes]
rs74072583	0.91[AFR][1000 genomes]
rs74072584	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74074581	1.00[AMR][1000 genomes]
rs7517483	0.91[AFR][1000 genomes]
rs7541355	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56365200-56382200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links