Variant report

Variant	rs6668334
Chromosome Location	chr1:56352346-56352347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10493188	1.00[AMR][1000 genomes]
rs17113005	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4506503	0.81[AFR][1000 genomes]
rs55849921	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56362704	0.89[AFR][1000 genomes]
rs59439199	1.00[AMR][1000 genomes]
rs59647629	0.87[AFR][1000 genomes]
rs60030344	1.00[AMR][1000 genomes]
rs60176740	0.82[AFR][1000 genomes]
rs60368363	1.00[AMR][1000 genomes]
rs61508861	1.00[AMR][1000 genomes]
rs6656739	0.89[AFR][1000 genomes]
rs6665123	0.89[AFR][1000 genomes]
rs6670261	0.89[AFR][1000 genomes]
rs6670667	0.89[AFR][1000 genomes]
rs6678585	0.87[AFR][1000 genomes]
rs6681550	0.87[AFR][1000 genomes]
rs6686957	0.82[AFR][1000 genomes]
rs6690389	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072547	0.96[AFR][1000 genomes]
rs74072548	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072549	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072551	0.89[AFR][1000 genomes]
rs74072553	0.89[AFR][1000 genomes]
rs74072554	0.86[AFR][1000 genomes]
rs74072559	0.89[AFR][1000 genomes]
rs74072560	0.89[AFR][1000 genomes]
rs74072561	0.89[AFR][1000 genomes]
rs74072562	0.89[AFR][1000 genomes]
rs74072563	0.89[AFR][1000 genomes]
rs74072564	0.89[AFR][1000 genomes]
rs74072565	0.87[AFR][1000 genomes]
rs74072584	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74074581	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56346000-56354600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:56349000-56352400	Weak transcription	Fetal Lung	lung
3	chr1:56350400-56353000	Enhancers	NHDF-Ad	bronchial
4	chr1:56350800-56353800	Enhancers	Fetal Stomach	stomach
5	chr1:56352000-56353400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:56352200-56353200	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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