Variant report

Variant	rs6690389
Chromosome Location	chr1:56351863-56351864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10493188	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17113005	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4506503	0.83[AFR][1000 genomes]
rs55849921	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56362704	0.91[AFR][1000 genomes]
rs59439199	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59647629	0.89[AFR][1000 genomes]
rs60030344	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60176740	0.83[AFR][1000 genomes]
rs60368363	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61508861	1.00[AMR][1000 genomes]
rs6656739	0.91[AFR][1000 genomes]
rs6665123	0.91[AFR][1000 genomes]
rs6668334	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6670261	0.91[AFR][1000 genomes]
rs6670651	0.81[AFR][1000 genomes]
rs6670667	0.91[AFR][1000 genomes]
rs6678585	0.89[AFR][1000 genomes]
rs6681550	0.89[AFR][1000 genomes]
rs6686957	0.83[AFR][1000 genomes]
rs74072547	0.98[AFR][1000 genomes]
rs74072548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072551	0.91[AFR][1000 genomes]
rs74072553	0.91[AFR][1000 genomes]
rs74072554	0.87[AFR][1000 genomes]
rs74072559	0.91[AFR][1000 genomes]
rs74072560	0.91[AFR][1000 genomes]
rs74072561	0.91[AFR][1000 genomes]
rs74072562	0.91[AFR][1000 genomes]
rs74072563	0.91[AFR][1000 genomes]
rs74072564	0.91[AFR][1000 genomes]
rs74072565	0.89[AFR][1000 genomes]
rs74072584	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74074581	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56346000-56354600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:56347000-56352000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:56349000-56352400	Weak transcription	Fetal Lung	lung
4	chr1:56350400-56353000	Enhancers	NHDF-Ad	bronchial
5	chr1:56350800-56353800	Enhancers	Fetal Stomach	stomach
6	chr1:56351600-56352000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links