Variant report

Variant	rs6678585
Chromosome Location	chr1:56355245-56355246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56354852..56356556-chr1:56356929..56358473,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs17113005	0.86[AFR][1000 genomes]
rs4255418	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4406678	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4506503	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55805972	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55849921	0.86[AFR][1000 genomes]
rs56362704	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57782086	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58572119	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59647629	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60176740	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60384077	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6656739	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6665123	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6668334	0.87[AFR][1000 genomes]
rs6670261	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6670651	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6670667	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6681550	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6686957	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6690389	0.89[AFR][1000 genomes]
rs74072547	0.87[AFR][1000 genomes]
rs74072548	0.89[AFR][1000 genomes]
rs74072549	0.89[AFR][1000 genomes]
rs74072551	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072553	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072554	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072559	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072560	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072561	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072562	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072563	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072564	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072565	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072583	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072584	0.82[AFR][1000 genomes]
rs7517483	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7541355	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56354400-56355400	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links