Variant report

Variant	rs66721487
Chromosome Location	chr12:87625907-87625908
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 131 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs10858556	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11104241	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11104353	1.00[EUR][1000 genomes]
rs11608450	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11608474	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11609545	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11609577	0.95[EUR][1000 genomes]
rs11609959	1.00[EUR][1000 genomes]
rs11610000	0.95[EUR][1000 genomes]
rs11610202	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11610240	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11610610	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11611298	0.95[EUR][1000 genomes]
rs11612996	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11613608	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11614902	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11615280	0.95[EUR][1000 genomes]
rs11615328	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11615381	0.95[EUR][1000 genomes]
rs12099694	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12099773	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12099774	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12301215	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17014343	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17014345	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17014347	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17014352	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17014355	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17014357	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17014359	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17014361	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17014363	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17014366	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17014369	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17014430	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55676823	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55742281	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55844216	0.95[EUR][1000 genomes]
rs56212508	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56350179	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60530487	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60718562	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66489945	1.00[EUR][1000 genomes]
rs66507120	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66520580	1.00[EUR][1000 genomes]
rs66543122	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66569903	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66589206	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66606466	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66721237	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66739429	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66761801	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66796553	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66881017	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66920061	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66935924	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66952248	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66983270	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66995551	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67126124	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67136611	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67152262	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67261476	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67311221	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67399263	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67407309	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67429282	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67448624	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67535999	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67562061	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67639118	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67642342	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67651962	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67687334	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67691941	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67735893	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67751006	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67755243	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67768352	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67840505	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67964737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67980276	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67982985	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs68008015	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs68009363	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs68030146	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs68133325	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs68145579	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs68166481	0.91[EUR][1000 genomes]
rs71078956	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7305593	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73175494	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73175495	0.95[EUR][1000 genomes]
rs73175498	0.95[EUR][1000 genomes]
rs73175502	0.95[EUR][1000 genomes]
rs73177627	0.95[EUR][1000 genomes]
rs73177634	0.95[EUR][1000 genomes]
rs73177637	0.95[EUR][1000 genomes]
rs73177701	0.95[EUR][1000 genomes]
rs73179835	0.95[EUR][1000 genomes]
rs73179837	0.95[EUR][1000 genomes]
rs73179847	0.95[EUR][1000 genomes]
rs73179849	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73179855	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73179857	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73181416	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73181421	0.95[EUR][1000 genomes]
rs73181428	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73181432	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73181435	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73181437	0.95[EUR][1000 genomes]
rs73181441	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73194307	1.00[EUR][1000 genomes]
rs73194312	1.00[EUR][1000 genomes]
rs73194315	1.00[EUR][1000 genomes]
rs73194345	1.00[EUR][1000 genomes]
rs73194353	1.00[EUR][1000 genomes]
rs73194356	1.00[EUR][1000 genomes]
rs73194359	1.00[EUR][1000 genomes]
rs73194369	1.00[EUR][1000 genomes]
rs73194373	1.00[EUR][1000 genomes]
rs73194374	1.00[EUR][1000 genomes]
rs73197878	0.95[EUR][1000 genomes]
rs73197888	0.95[EUR][1000 genomes]
rs73197891	0.95[EUR][1000 genomes]
rs73197895	0.95[EUR][1000 genomes]
rs73199707	1.00[EUR][1000 genomes]
rs73199710	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899397	chr12:86863041-87636831	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1054581	chr12:87510821-87669648	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87625400-87626000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr12:87625800-87626400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:87625800-87628600	Weak transcription	HMEC	breast

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