Variant report

Variant	rs73199707
Chromosome Location	chr12:87557046-87557047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 176 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:167)

rs_ID	r²[population]
rs10858556	0.95[EUR][1000 genomes]
rs11104222	0.95[EUR][1000 genomes]
rs11104241	0.95[EUR][1000 genomes]
rs11104353	1.00[EUR][1000 genomes]
rs11608450	0.95[EUR][1000 genomes]
rs11608474	0.95[EUR][1000 genomes]
rs11609545	0.95[EUR][1000 genomes]
rs11609577	0.95[EUR][1000 genomes]
rs11609959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11610000	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11610202	0.95[EUR][1000 genomes]
rs11610236	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11610240	0.95[EUR][1000 genomes]
rs11610610	0.95[EUR][1000 genomes]
rs11611298	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11612996	0.95[EUR][1000 genomes]
rs11613608	0.95[EUR][1000 genomes]
rs11614902	0.95[EUR][1000 genomes]
rs11615280	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11615328	0.95[EUR][1000 genomes]
rs11615381	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12099694	0.95[EUR][1000 genomes]
rs12099773	0.95[EUR][1000 genomes]
rs12099774	0.95[EUR][1000 genomes]
rs12301215	0.95[EUR][1000 genomes]
rs17014343	0.95[EUR][1000 genomes]
rs17014345	0.95[EUR][1000 genomes]
rs17014347	0.95[EUR][1000 genomes]
rs17014352	0.95[EUR][1000 genomes]
rs17014355	0.95[EUR][1000 genomes]
rs17014357	0.95[EUR][1000 genomes]
rs17014359	0.95[EUR][1000 genomes]
rs17014361	0.95[EUR][1000 genomes]
rs17014363	0.95[EUR][1000 genomes]
rs17014366	0.95[EUR][1000 genomes]
rs17014369	0.95[EUR][1000 genomes]
rs17014430	0.95[EUR][1000 genomes]
rs34212176	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35772317	0.95[EUR][1000 genomes]
rs55675470	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55676823	0.95[EUR][1000 genomes]
rs55742281	0.85[EUR][1000 genomes]
rs55778807	0.95[EUR][1000 genomes]
rs55844216	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56212508	0.85[EUR][1000 genomes]
rs56337441	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56350179	0.95[EUR][1000 genomes]
rs59432611	0.85[EUR][1000 genomes]
rs60530487	0.95[EUR][1000 genomes]
rs60718562	0.95[EUR][1000 genomes]
rs61619114	0.85[EUR][1000 genomes]
rs66473769	0.85[EUR][1000 genomes]
rs66489945	1.00[EUR][1000 genomes]
rs66507120	0.95[EUR][1000 genomes]
rs66520580	1.00[EUR][1000 genomes]
rs66543122	0.95[EUR][1000 genomes]
rs66569903	0.95[EUR][1000 genomes]
rs66574092	0.95[EUR][1000 genomes]
rs66589206	0.95[EUR][1000 genomes]
rs66606466	0.95[EUR][1000 genomes]
rs66624731	0.95[EUR][1000 genomes]
rs66629114	0.85[EUR][1000 genomes]
rs66721237	0.95[EUR][1000 genomes]
rs66721487	1.00[EUR][1000 genomes]
rs66739429	0.95[EUR][1000 genomes]
rs66761801	0.95[EUR][1000 genomes]
rs66796553	0.95[EUR][1000 genomes]
rs66824103	0.85[EUR][1000 genomes]
rs66881017	0.95[EUR][1000 genomes]
rs66920061	0.95[EUR][1000 genomes]
rs66935924	0.95[EUR][1000 genomes]
rs66952248	0.95[EUR][1000 genomes]
rs66983270	0.95[EUR][1000 genomes]
rs66995551	0.95[EUR][1000 genomes]
rs67126124	0.95[EUR][1000 genomes]
rs67136611	0.95[EUR][1000 genomes]
rs67152262	0.95[EUR][1000 genomes]
rs67224165	0.85[EUR][1000 genomes]
rs67261476	0.95[EUR][1000 genomes]
rs67311221	0.95[EUR][1000 genomes]
rs67347619	0.85[EUR][1000 genomes]
rs67399263	0.95[EUR][1000 genomes]
rs67407309	0.95[EUR][1000 genomes]
rs67429282	0.95[EUR][1000 genomes]
rs67448624	0.95[EUR][1000 genomes]
rs67535999	0.95[EUR][1000 genomes]
rs67562061	0.95[EUR][1000 genomes]
rs67639118	0.95[EUR][1000 genomes]
rs67642342	0.95[EUR][1000 genomes]
rs67651962	1.00[EUR][1000 genomes]
rs67654202	0.85[EUR][1000 genomes]
rs67687334	0.95[EUR][1000 genomes]
rs67691941	0.95[EUR][1000 genomes]
rs67735893	0.95[EUR][1000 genomes]
rs67748606	0.86[EUR][1000 genomes]
rs67751006	0.95[EUR][1000 genomes]
rs67755243	0.95[EUR][1000 genomes]
rs67768352	0.95[EUR][1000 genomes]
rs67823383	0.95[EUR][1000 genomes]
rs67825879	0.85[EUR][1000 genomes]
rs67840505	0.95[EUR][1000 genomes]
rs67964737	1.00[EUR][1000 genomes]
rs67980276	0.95[EUR][1000 genomes]
rs67982985	0.95[EUR][1000 genomes]
rs68008015	0.95[EUR][1000 genomes]
rs68009363	0.95[EUR][1000 genomes]
rs68030146	0.95[EUR][1000 genomes]
rs68133325	0.95[EUR][1000 genomes]
rs68145579	0.86[EUR][1000 genomes]
rs68166481	0.91[EUR][1000 genomes]
rs71078956	0.95[EUR][1000 genomes]
rs7305593	0.95[EUR][1000 genomes]
rs73175412	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73175417	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73175427	0.85[EUR][1000 genomes]
rs73175466	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73175468	0.95[EUR][1000 genomes]
rs73175469	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73175473	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73175476	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73175480	0.95[EUR][1000 genomes]
rs73175482	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73175487	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73175494	0.95[EUR][1000 genomes]
rs73175495	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73175498	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73175502	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73177627	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73177634	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73177637	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73177701	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73179835	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73179837	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73179847	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73179849	0.95[EUR][1000 genomes]
rs73179855	0.95[EUR][1000 genomes]
rs73179857	0.86[EUR][1000 genomes]
rs73181416	0.95[EUR][1000 genomes]
rs73181421	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73181428	0.95[EUR][1000 genomes]
rs73181432	0.95[EUR][1000 genomes]
rs73181435	0.95[EUR][1000 genomes]
rs73181437	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73181441	0.86[EUR][1000 genomes]
rs73192732	0.85[EUR][1000 genomes]
rs73192735	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73192741	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73192749	0.85[EUR][1000 genomes]
rs73192750	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73192753	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73192760	0.85[EUR][1000 genomes]
rs73192766	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73194307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73194312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73194315	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73194345	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73194353	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73194356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73194359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73194369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73194373	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73194374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197878	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73197888	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73197891	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73197895	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73199710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv899397	chr12:86863041-87636831	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv868879	chr12:87207243-87578373	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1052693	chr12:87219949-87573582	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv899416	chr12:87442480-87588533	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv899417	chr12:87475632-87588533	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1036043	chr12:87503257-87592799	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1054581	chr12:87510821-87669648	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87555400-87561600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:87557000-87557200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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