Variant report

Variant	rs6673234
Chromosome Location	chr1:215722987-215722988
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215722423..215724891-chr1:215740211..215742928,2	K562	blood:
2	chr1:215722423..215725926-chr1:215740211..215742928,3	K562	blood:

Variant related genes	Relation type
ENSG00000136636	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1027820	1.00[AMR][1000 genomes]
rs1557172	0.82[AFR][1000 genomes]
rs2102370	1.00[AMR][1000 genomes]
rs58542168	0.82[AFR][1000 genomes]
rs58594611	0.82[AFR][1000 genomes]
rs59417960	1.00[AMR][1000 genomes]
rs61346484	1.00[AMR][1000 genomes]
rs6669126	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6669520	1.00[AMR][1000 genomes]
rs6674311	1.00[AMR][1000 genomes]
rs6676725	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6682584	1.00[AMR][1000 genomes]
rs6684615	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6684799	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6685149	1.00[AMR][1000 genomes]
rs6685832	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6697600	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73083432	1.00[AMR][1000 genomes]
rs73083461	0.82[AFR][1000 genomes]
rs73083470	0.82[AFR][1000 genomes]
rs73085423	1.00[AMR][1000 genomes]
rs73085425	1.00[AMR][1000 genomes]
rs73085429	1.00[AMR][1000 genomes]
rs73085436	1.00[AMR][1000 genomes]
rs73085441	1.00[AMR][1000 genomes]
rs73085453	1.00[AMR][1000 genomes]
rs73085455	1.00[AMR][1000 genomes]
rs7511859	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7522198	1.00[AMR][1000 genomes]
rs7522720	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1796390	chr1:215561548-215799074	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1014266	chr1:215573051-215730838	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	esv3411228	chr1:215704606-215742745	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv945291	chr1:215717059-215737649	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3334079	chr1:215717606-215745691	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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