Variant report

Variant	rs73083432
Chromosome Location	chr1:215674944-215674945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1027820	1.00[AMR][1000 genomes]
rs1557172	0.91[AFR][1000 genomes]
rs2102370	1.00[AMR][1000 genomes]
rs58542168	0.91[AFR][1000 genomes]
rs58594611	0.91[AFR][1000 genomes]
rs58649725	1.00[AFR][1000 genomes]
rs59417960	1.00[AMR][1000 genomes]
rs61346484	1.00[AMR][1000 genomes]
rs6669126	1.00[AMR][1000 genomes]
rs6669520	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6673234	1.00[AMR][1000 genomes]
rs6674311	1.00[AMR][1000 genomes]
rs6676725	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6682584	1.00[AMR][1000 genomes]
rs6684615	1.00[AMR][1000 genomes]
rs6684799	1.00[AMR][1000 genomes]
rs6685149	1.00[AMR][1000 genomes]
rs6685832	1.00[AMR][1000 genomes]
rs6689680	0.84[AFR][1000 genomes]
rs6697600	1.00[AMR][1000 genomes]
rs6700397	0.84[AFR][1000 genomes]
rs73083421	0.98[AFR][1000 genomes]
rs73083429	0.98[AFR][1000 genomes]
rs73083436	1.00[AFR][1000 genomes]
rs73083437	0.93[AFR][1000 genomes]
rs73083461	0.91[AFR][1000 genomes]
rs73083470	0.91[AFR][1000 genomes]
rs73085404	0.86[AFR][1000 genomes]
rs73085410	0.84[AFR][1000 genomes]
rs73085423	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73085425	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73085429	1.00[AMR][1000 genomes]
rs73085436	1.00[AMR][1000 genomes]
rs73085441	1.00[AMR][1000 genomes]
rs73085453	1.00[AMR][1000 genomes]
rs73085455	1.00[AMR][1000 genomes]
rs7511859	1.00[AMR][1000 genomes]
rs7522198	1.00[AMR][1000 genomes]
rs7522720	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832537	chr1:215509026-215705105	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1796390	chr1:215561548-215799074	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1014266	chr1:215573051-215730838	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215664000-215675000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:215674800-215675000	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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