Variant report

Variant	rs6676725
Chromosome Location	chr1:215702628-215702629
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215700969..215702703-chr20:46290057..46292386,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196562	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1027820	1.00[AMR][1000 genomes]
rs1557172	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1819740	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes]
rs2102370	1.00[AMR][1000 genomes]
rs2797240	1.00[MEX][hapmap]
rs2797392	1.00[MEX][hapmap]
rs57397989	0.84[AFR][1000 genomes]
rs58542168	1.00[AFR][1000 genomes]
rs58594611	1.00[AFR][1000 genomes]
rs58649725	0.91[AFR][1000 genomes]
rs59417960	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59635576	0.84[AFR][1000 genomes]
rs60533889	0.80[AFR][1000 genomes]
rs61346484	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6540901	1.00[ASW][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.82[YRI][hapmap]
rs6669126	1.00[AMR][1000 genomes]
rs6669520	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6673234	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6674311	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6682584	1.00[AMR][1000 genomes]
rs6684615	1.00[AMR][1000 genomes]
rs6684799	1.00[AMR][1000 genomes]
rs6685149	1.00[AMR][1000 genomes]
rs6685832	1.00[AMR][1000 genomes]
rs6689680	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs6697600	1.00[AMR][1000 genomes]
rs6700397	0.93[AFR][1000 genomes]
rs73083421	0.93[AFR][1000 genomes]
rs73083429	0.93[AFR][1000 genomes]
rs73083432	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73083436	0.91[AFR][1000 genomes]
rs73083437	0.98[AFR][1000 genomes]
rs73083461	1.00[AFR][1000 genomes]
rs73083470	1.00[AFR][1000 genomes]
rs73085404	0.95[AFR][1000 genomes]
rs73085410	0.93[AFR][1000 genomes]
rs73085423	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73085425	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73085429	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73085436	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73085441	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73085453	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73085455	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73087423	0.82[AFR][1000 genomes]
rs7511859	1.00[AMR][1000 genomes]
rs7522198	0.84[ASW][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7522720	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7531580	1.00[ASW][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.82[YRI][hapmap]
rs7545425	0.82[YRI][hapmap];0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832537	chr1:215509026-215705105	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1796390	chr1:215561548-215799074	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1014266	chr1:215573051-215730838	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215702200-215703200	Enhancers	NHDF-Ad	bronchial
2	chr1:215702200-215703600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:215702400-215702800	Enhancers	GM12878-XiMat	blood
4	chr1:215702400-215703000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:215702400-215703200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:215702400-215703200	Enhancers	K562	blood
7	chr1:215702600-215703000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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