Variant report

Variant	rs66761782
Chromosome Location	chr6:36636080-36636081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36631478..36636279-chr6:36645838..36648638,4	K562	blood:
2	chr6:36621309..36623042-chr6:36633695..36636161,2	K562	blood:
3	chr6:36628825..36632720-chr6:36633397..36637228,8	MCF-7	breast:
4	chr6:36633980..36636533-chr6:36690989..36693316,2	MCF-7	breast:
5	chr6:36635018..36637044-chr6:36710933..36713268,2	K562	blood:
6	chr6:36630192..36637203-chr6:36642841..36649451,13	K562	blood:
7	chr6:36628763..36632041-chr6:36634655..36636899,4	MCF-7	breast:
8	chr6:36608940..36611586-chr6:36633683..36636371,2	MCF-7	breast:
9	chr6:36524196..36527132-chr6:36635202..36638000,2	MCF-7	breast:
10	chr6:36584679..36586444-chr6:36633785..36636710,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000124762	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12199346	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12207916	0.88[ASN][1000 genomes]
rs1321310	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1321311	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1321313	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4331968	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56100429	0.90[ASN][1000 genomes]
rs7742159	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7756236	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7774130	0.82[AMR][1000 genomes]
rs9462207	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9462210	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9470358	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9470361	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9470366	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9918353	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv602946	chr6:36633160-36641478	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36628200-36636600	Enhancers	Primary B cells from peripheral blood	blood
2	chr6:36631000-36644000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:36632000-36638800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:36633200-36640200	Enhancers	HepG2	liver
5	chr6:36633400-36637000	Enhancers	Ovary	ovary
6	chr6:36633600-36637200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:36633600-36637200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:36633600-36637400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:36633600-36637800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:36633800-36636600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:36633800-36637000	Enhancers	NHDF-Ad	bronchial
12	chr6:36633800-36637200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:36633800-36637800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:36634000-36636200	Enhancers	HMEC	breast
15	chr6:36634000-36636400	Enhancers	NH-A	brain
16	chr6:36634000-36636600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:36634000-36636600	Enhancers	Pancreas	Pancrea
18	chr6:36634000-36637000	Enhancers	Osteobl	bone
19	chr6:36634000-36637200	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr6:36634000-36637200	Enhancers	HSMM	muscle
21	chr6:36634000-36637400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:36634000-36637400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:36634200-36637800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:36634400-36636400	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr6:36634400-36637200	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr6:36634600-36636200	Enhancers	Primary B cells from cord blood	blood
27	chr6:36634600-36638000	Enhancers	Fetal Muscle Leg	muscle
28	chr6:36634800-36638200	Enhancers	Fetal Muscle Trunk	muscle
29	chr6:36635000-36637800	Enhancers	HSMMtube	muscle
30	chr6:36635200-36636400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:36635200-36637200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:36635200-36637200	Enhancers	Brain Hippocampus Middle	brain
33	chr6:36635200-36643800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr6:36635400-36636200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr6:36635400-36636200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr6:36635400-36636400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr6:36635400-36636400	Weak transcription	Psoas Muscle	Psoas
38	chr6:36635400-36636400	Enhancers	A549	lung
39	chr6:36635400-36636800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr6:36635400-36636800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr6:36635400-36637200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:36635400-36637200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:36635400-36637200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:36635400-36637200	Enhancers	GM12878-XiMat	blood
45	chr6:36635400-36637400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr6:36635400-36637400	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr6:36635400-36639600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr6:36635400-36644000	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr6:36635400-36645600	Weak transcription	Small Intestine	intestine
50	chr6:36635600-36636600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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