Variant report

Variant	rs9462210
Chromosome Location	chr6:36628953-36628954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36561045..36564139-chr6:36628780..36632621,3	K562	blood:
2	chr6:36628763..36632041-chr6:36634655..36636899,4	MCF-7	breast:
3	chr6:36618015..36619715-chr6:36627253..36629685,2	MCF-7	breast:
4	chr6:36586935..36591070-chr6:36628683..36631077,3	K562	blood:
5	chr6:36628825..36632720-chr6:36633397..36637228,8	MCF-7	breast:
6	chr6:36560914..36563599-chr6:36627068..36629393,2	K562	blood:
7	chr6:36627657..36630518-chr6:36646219..36647988,2	K562	blood:

Variant related genes	Relation type
ENSG00000112081	Chromatin interaction
ENSG00000263894	Chromatin interaction
ENSG00000124762	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12199346	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12207916	0.81[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1321310	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1321311	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1321313	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4331968	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4713999	0.83[YRI][hapmap]
rs56100429	0.95[ASN][1000 genomes]
rs66761782	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7742159	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7756236	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7774130	0.82[AMR][1000 genomes]
rs9462207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470358	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9470361	0.95[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9470366	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9918353	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36626200-36629600	Weak transcription	Hela-S3	cervix
2	chr6:36627400-36629800	Bivalent Enhancer	Fetal Thymus	thymus
3	chr6:36627800-36634000	Weak transcription	HMEC	breast
4	chr6:36627800-36634000	Weak transcription	HSMM	muscle
5	chr6:36628000-36629000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
6	chr6:36628000-36629000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:36628000-36629000	Flanking Active TSS	Fetal Intestine Small	intestine
8	chr6:36628000-36631200	Enhancers	Primary B cells from cord blood	blood
9	chr6:36628200-36629000	Flanking Active TSS	Fetal Intestine Large	intestine
10	chr6:36628200-36636600	Enhancers	Primary B cells from peripheral blood	blood
11	chr6:36628400-36629000	Active TSS	H9 Cell Line	embryonic stem cell
12	chr6:36628400-36629000	Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr6:36628400-36629000	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr6:36628400-36629000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr6:36628400-36629000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:36628400-36629000	Flanking Active TSS	Colonic Mucosa	Colon
17	chr6:36628400-36629000	Flanking Active TSS	Ovary	ovary
18	chr6:36628400-36629200	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr6:36628400-36629200	Bivalent/Poised TSS	Fetal Brain Female	brain
20	chr6:36628400-36629200	Enhancers	Left Ventricle	heart
21	chr6:36628400-36629200	Bivalent Enhancer	Stomach Mucosa	stomach
22	chr6:36628600-36629000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:36628600-36629000	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr6:36628600-36629000	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
25	chr6:36628600-36629000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:36628600-36629000	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr6:36628600-36629000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:36628600-36629000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:36628600-36629000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr6:36628600-36629000	Flanking Active TSS	Adipose Nuclei	Adipose
31	chr6:36628600-36629000	Flanking Active TSS	Duodenum Mucosa	Duodenum
32	chr6:36628600-36629000	Flanking Active TSS	Esophagus	oesophagus
33	chr6:36628600-36629000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
34	chr6:36628600-36629000	Enhancers	Lung	lung
35	chr6:36628600-36629000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
36	chr6:36628600-36629000	Flanking Active TSS	Right Ventricle	heart
37	chr6:36628600-36629000	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
38	chr6:36628600-36629200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
39	chr6:36628600-36629200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr6:36628600-36629200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
41	chr6:36628600-36629200	Enhancers	Placenta	Placenta
42	chr6:36628600-36629200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
43	chr6:36628600-36629200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
44	chr6:36628600-36629200	Flanking Active TSS	Stomach Smooth Muscle	stomach
45	chr6:36628600-36629400	Enhancers	Pancreas	Pancrea
46	chr6:36628600-36629600	Enhancers	Spleen	Spleen
47	chr6:36628600-36631200	Enhancers	Gastric	stomach
48	chr6:36628800-36629000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
49	chr6:36628800-36629000	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr6:36628800-36629000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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