Variant report

Variant	rs9462207
Chromosome Location	chr6:36627599-36627600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36618015..36619715-chr6:36627253..36629685,2	MCF-7	breast:
2	chr6:36625867..36628028-chr6:36633354..36635356,2	MCF-7	breast:
3	chr6:36626473..36628728-chr6:36691772..36694267,2	MCF-7	breast:
4	chr6:36560914..36563599-chr6:36627068..36629393,2	K562	blood:
5	chr6:36589619..36593631-chr6:36625496..36627977,3	K562	blood:

Variant related genes	Relation type
ENSG00000263894	Chromatin interaction
ENSG00000112081	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12199346	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12207916	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1321310	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1321311	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1321313	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3176326	0.81[JPT][hapmap]
rs4331968	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56100429	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs66761782	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7742159	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7756236	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9462210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470358	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9470361	0.95[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9470366	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9918353	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	esv3448277	chr6:36625374-36628672	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36611600-36628600	Weak transcription	Right Atrium	heart
2	chr6:36619400-36628400	Weak transcription	Adipose Nuclei	Adipose
3	chr6:36620200-36628000	Weak transcription	Colonic Mucosa	Colon
4	chr6:36620200-36628600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:36622200-36628600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:36622400-36628800	Enhancers	GM12878-XiMat	blood
7	chr6:36623200-36628600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:36623400-36628800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:36624600-36627800	Enhancers	Placenta	Placenta
10	chr6:36624600-36628800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:36625000-36627600	Enhancers	Rectal Smooth Muscle	rectum
12	chr6:36625000-36628000	Enhancers	Osteobl	bone
13	chr6:36625000-36628200	Enhancers	Colon Smooth Muscle	Colon
14	chr6:36625000-36628800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:36625200-36627800	Enhancers	HMEC	breast
16	chr6:36625600-36627600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:36625600-36627600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:36625600-36627600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:36625600-36627600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr6:36625600-36627800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:36625600-36627800	Enhancers	HSMM	muscle
22	chr6:36625600-36628000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:36625600-36628400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:36625600-36628800	Enhancers	NHDF-Ad	bronchial
25	chr6:36625800-36627800	Enhancers	HSMMtube	muscle
26	chr6:36625800-36628000	Weak transcription	Fetal Intestine Small	intestine
27	chr6:36625800-36628400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:36626000-36627800	Enhancers	NHLF	lung
29	chr6:36626000-36628200	Enhancers	Fetal Heart	heart
30	chr6:36626200-36628200	Weak transcription	Fetal Intestine Large	intestine
31	chr6:36626200-36629600	Weak transcription	Hela-S3	cervix
32	chr6:36626400-36628600	Weak transcription	NH-A	brain
33	chr6:36626800-36628400	Bivalent Enhancer	Fetal Muscle Leg	muscle
34	chr6:36627000-36627600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:36627200-36627600	Enhancers	H1 Cell Line	embryonic stem cell
36	chr6:36627200-36627600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr6:36627200-36628400	Enhancers	Ovary	ovary
38	chr6:36627400-36627600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr6:36627400-36627600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:36627400-36627600	Enhancers	H9 Cell Line	embryonic stem cell
41	chr6:36627400-36627600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:36627400-36627600	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr6:36627400-36627600	Enhancers	Esophagus	oesophagus
44	chr6:36627400-36627600	Bivalent Enhancer	Fetal Stomach	stomach
45	chr6:36627400-36627600	Enhancers	Left Ventricle	heart
46	chr6:36627400-36627600	Enhancers	Psoas Muscle	Psoas
47	chr6:36627400-36627600	Bivalent Enhancer	NHEK	skin
48	chr6:36627400-36628200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
49	chr6:36627400-36628600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:36627400-36628800	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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