Variant report

Variant	rs7742159
Chromosome Location	chr6:36619452-36619453
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36618015..36619715-chr6:36627253..36629685,2	MCF-7	breast:
2	chr6:36618935..36620728-chr6:36645456..36648075,2	MCF-7	breast:
3	chr6:36615853..36625488-chr6:36645022..36649146,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124762	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12199346	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12207916	0.95[ASN][1000 genomes]
rs1321310	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1321311	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1321313	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4331968	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56100429	0.96[ASN][1000 genomes]
rs66761782	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7756236	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7774130	0.84[AMR][1000 genomes]
rs9462207	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9462210	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9470358	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470361	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470366	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9918353	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
2	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36611600-36628600	Weak transcription	Right Atrium	heart
2	chr6:36613200-36619600	Weak transcription	Placenta	Placenta
3	chr6:36613400-36625000	Weak transcription	Fetal Kidney	kidney
4	chr6:36617000-36619800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:36617200-36620200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr6:36617200-36620400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:36617400-36619600	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr6:36617400-36620400	Enhancers	Primary B cells from cord blood	blood
9	chr6:36617400-36620400	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr6:36617400-36620600	Enhancers	Duodenum Mucosa	Duodenum
11	chr6:36617400-36621600	Enhancers	Fetal Intestine Large	intestine
12	chr6:36617400-36621600	Enhancers	Fetal Intestine Small	intestine
13	chr6:36617600-36619800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:36617800-36619600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:36617800-36619800	Bivalent Enhancer	HepG2	liver
16	chr6:36617800-36620000	Enhancers	Primary B cells from peripheral blood	blood
17	chr6:36618000-36619600	Enhancers	Fetal Thymus	thymus
18	chr6:36618000-36621400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:36618200-36624600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:36618200-36627400	Weak transcription	Left Ventricle	heart
21	chr6:36618400-36619600	Weak transcription	Small Intestine	intestine
22	chr6:36618600-36619600	Flanking Active TSS	GM12878-XiMat	blood
23	chr6:36618800-36619600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:36618800-36621800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr6:36618800-36622800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:36619000-36620000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:36619000-36621800	Weak transcription	Thymus	Thymus
28	chr6:36619200-36620400	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr6:36619200-36625600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr6:36619400-36620200	Enhancers	Colonic Mucosa	Colon
31	chr6:36619400-36622800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:36619400-36628400	Weak transcription	Adipose Nuclei	Adipose

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