Variant report

Variant	rs6679121
Chromosome Location	chr1:47867150-47867151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:47861286..47863513-chr1:47865315..47867381,2	MCF-7	breast:

rs_ID	r²[population]
rs10157883	0.86[JPT][hapmap]
rs10399673	0.95[JPT][hapmap]
rs10437097	0.91[EUR][1000 genomes]
rs10789507	0.86[JPT][hapmap]
rs10890475	0.86[JPT][hapmap]
rs10890478	0.85[JPT][hapmap]
rs11211504	0.86[JPT][hapmap]
rs11211508	0.86[JPT][hapmap];0.81[TSI][hapmap]
rs11211513	0.86[JPT][hapmap]
rs11211517	0.90[JPT][hapmap]
rs11211520	0.85[JPT][hapmap]
rs11582877	0.86[JPT][hapmap]
rs12039726	0.89[CEU][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs12090153	0.82[JPT][hapmap]
rs12407746	0.81[EUR][1000 genomes]
rs2405922	0.90[JPT][hapmap]
rs2406102	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2406105	0.83[EUR][1000 genomes]
rs2472725	0.90[JPT][hapmap]
rs2622925	0.90[JPT][hapmap]
rs2622927	0.81[GIH][hapmap]
rs2742104	0.86[JPT][hapmap]
rs2758735	0.86[JPT][hapmap]
rs2820971	0.90[JPT][hapmap]
rs2820983	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2820989	0.90[JPT][hapmap]
rs2821088	0.86[JPT][hapmap]
rs2821093	0.90[JPT][hapmap]
rs3088062	0.89[CEU][hapmap];0.86[JPT][hapmap];0.85[TSI][hapmap]
rs3122607	0.86[JPT][hapmap]
rs3122611	0.86[JPT][hapmap]
rs3122615	0.85[JPT][hapmap]
rs3122619	0.86[JPT][hapmap]
rs3125624	0.86[JPT][hapmap]
rs3125628	0.85[JPT][hapmap]
rs3125630	0.86[JPT][hapmap]
rs3125632	0.81[JPT][hapmap]
rs3125633	0.90[JPT][hapmap]
rs3125635	0.86[JPT][hapmap];0.81[TSI][hapmap]
rs3125636	0.84[JPT][hapmap]
rs3125644	0.85[JPT][hapmap];0.80[TSI][hapmap]
rs3814003	0.83[CEU][hapmap]
rs3925058	0.86[JPT][hapmap]
rs4492666	0.85[JPT][hapmap]
rs4603175	0.95[JPT][hapmap]
rs4926836	0.86[JPT][hapmap]
rs6588348	0.90[JPT][hapmap]
rs6660321	0.89[CEU][hapmap];0.86[JPT][hapmap]
rs6662189	0.87[EUR][1000 genomes]
rs6671254	0.86[JPT][hapmap]
rs6673882	0.95[JPT][hapmap]
rs6697248	0.86[JPT][hapmap];0.81[TSI][hapmap]
rs6699343	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7525650	0.90[JPT][hapmap]
rs7532148	0.86[JPT][hapmap]
rs9436430	0.90[JPT][hapmap]
rs9436882	0.86[JPT][hapmap]

SNP	Gene	Cis/trans	Tissue	Source
rs6679121	CMPK1	cis	lymphoblastoid	seeQTL
rs6679121	SNORD38A	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47847600-47872800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:47866600-47867600	Bivalent Enhancer	Small Intestine	intestine
3	chr1:47866600-47869200	Enhancers	Fetal Intestine Large	intestine
4	chr1:47866600-47869200	Enhancers	Fetal Intestine Small	intestine
5	chr1:47867000-47867400	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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