Variant report

Variant	rs3125636
Chromosome Location	chr1:47750268-47750269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:47748903..47750485-chr1:47798676..47800634,2	K562	blood:

Variant related genes	Relation type
ENSG00000162368	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10157883	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1028646	0.89[ASN][1000 genomes]
rs1028647	0.89[ASN][1000 genomes]
rs10789507	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10890475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10890476	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10890477	0.82[EUR][1000 genomes]
rs10890478	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11211504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211508	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11211511	0.81[ASN][1000 genomes]
rs11211513	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11211517	0.95[JPT][hapmap]
rs11211520	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11211521	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11211522	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11211523	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11211524	0.95[CHB][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11578038	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11582877	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12024163	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12039726	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12040451	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12042624	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12046294	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12047319	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12048407	0.82[EUR][1000 genomes]
rs12409549	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12566521	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2306470	0.84[ASN][1000 genomes]
rs2406105	0.82[ASN][1000 genomes]
rs2472725	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2472730	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2472731	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2494247	0.89[ASN][1000 genomes]
rs2622925	0.95[JPT][hapmap]
rs2742081	0.81[ASN][1000 genomes]
rs2742099	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2742103	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2742104	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2758735	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2758736	0.88[ASN][1000 genomes]
rs2758737	0.89[ASN][1000 genomes]
rs2758744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2820989	0.95[JPT][hapmap]
rs2821087	0.89[ASN][1000 genomes]
rs2821088	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2821089	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2821090	0.89[ASN][1000 genomes]
rs2821092	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2821093	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2821096	0.82[ASN][1000 genomes]
rs2897237	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3088062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3122607	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3122611	0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3122615	0.84[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3122616	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3122619	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3122620	0.85[ASN][1000 genomes]
rs3122623	0.81[ASN][1000 genomes]
rs3125624	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3125628	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs3125630	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3125631	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3125632	0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs3125633	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs3125635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3125638	0.85[ASN][1000 genomes]
rs3125641	0.91[ASN][1000 genomes]
rs3125644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35880845	0.85[ASN][1000 genomes]
rs3814003	0.81[CEU][hapmap]
rs3923691	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3925058	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4463720	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4492666	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4926836	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4926839	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56987466	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58688029	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59492977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61284456	0.82[EUR][1000 genomes]
rs61782712	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61782733	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6588348	0.95[JPT][hapmap]
rs6660321	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6671254	0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6689687	0.81[ASN][1000 genomes]
rs6697248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7511699	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7525650	0.95[JPT][hapmap]
rs7532148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7541522	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7541748	0.85[ASN][1000 genomes]
rs7545281	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9436394	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9436429	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9436430	0.93[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9436749	0.91[ASN][1000 genomes]
rs9436838	0.81[ASN][1000 genomes]
rs9436882	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47705200-47766400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:47705600-47766400	Weak transcription	Primary T cells from cord blood	blood
3	chr1:47714400-47779200	Weak transcription	Small Intestine	intestine
4	chr1:47714600-47778400	Weak transcription	Fetal Heart	heart
5	chr1:47716600-47772600	Strong transcription	Dnd41	blood
6	chr1:47720400-47757000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:47720600-47766400	Weak transcription	Brain Germinal Matrix	brain
8	chr1:47721600-47766800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr1:47723400-47772400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:47728600-47755200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr1:47729000-47767000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr1:47730400-47770200	Weak transcription	Colonic Mucosa	Colon
13	chr1:47730800-47755000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr1:47730800-47766400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:47731400-47778000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr1:47735200-47754000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr1:47735400-47779000	Weak transcription	Esophagus	oesophagus
18	chr1:47740400-47757200	Weak transcription	Gastric	stomach
19	chr1:47741400-47771400	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr1:47741600-47754000	Weak transcription	Primary B cells from peripheral blood	blood
21	chr1:47741600-47770800	Strong transcription	Fetal Thymus	thymus
22	chr1:47741800-47770800	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr1:47742200-47751000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr1:47742600-47773000	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr1:47742600-47773000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr1:47742800-47751600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr1:47742800-47757000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr1:47742800-47763800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr1:47743000-47753600	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr1:47743200-47754000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr1:47743800-47766400	Weak transcription	Fetal Kidney	kidney
32	chr1:47743800-47779200	Weak transcription	Brain Hippocampus Middle	brain
33	chr1:47744200-47779000	Weak transcription	Brain Angular Gyrus	brain
34	chr1:47744400-47779000	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr1:47744600-47754600	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr1:47744800-47750800	Strong transcription	GM12878-XiMat	blood
37	chr1:47744800-47753000	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr1:47744800-47779000	Weak transcription	HSMMtube	muscle
39	chr1:47745000-47750400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr1:47745000-47751200	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr1:47745000-47751200	Strong transcription	HUVEC	blood vessel
42	chr1:47745000-47762000	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr1:47745400-47750400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr1:47745600-47750600	Weak transcription	Fetal Intestine Small	intestine
45	chr1:47745600-47751600	Strong transcription	Hela-S3	cervix
46	chr1:47746200-47772000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr1:47746200-47778800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr1:47746400-47751200	Strong transcription	K562	blood
49	chr1:47746400-47752000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr1:47746400-47754000	Weak transcription	Primary B cells from cord blood	blood

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