Variant report

Variant	rs4463720
Chromosome Location	chr1:47734244-47734245
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:47728110..47730065-chr1:47732683..47735078,2	K562	blood:
2	chr1:47727088..47730894-chr1:47732029..47735166,5	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10157883	0.83[ASN][1000 genomes]
rs1028646	0.82[ASN][1000 genomes]
rs1028647	0.82[ASN][1000 genomes]
rs10890475	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10890476	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11211504	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11211508	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11211513	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11578038	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11582877	0.84[ASN][1000 genomes]
rs12024163	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12040451	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12042624	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12047319	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12409549	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2472730	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2472731	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2494247	0.82[ASN][1000 genomes]
rs2742099	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2742103	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2742104	0.83[ASN][1000 genomes]
rs2758735	0.82[ASN][1000 genomes]
rs2758736	0.80[ASN][1000 genomes]
rs2758737	0.82[ASN][1000 genomes]
rs2758744	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2821087	0.82[ASN][1000 genomes]
rs2821088	0.82[ASN][1000 genomes]
rs2821089	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2821090	0.82[ASN][1000 genomes]
rs2821092	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2897237	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3122607	0.82[ASN][1000 genomes]
rs3122615	0.82[ASN][1000 genomes]
rs3122616	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3122619	0.83[ASN][1000 genomes]
rs3125631	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3125632	0.80[ASN][1000 genomes]
rs3125635	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3125636	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3125641	0.83[ASN][1000 genomes]
rs3125644	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3923691	0.89[AMR][1000 genomes]
rs56987466	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58688029	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59492977	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61782712	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61782733	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6671254	0.80[ASN][1000 genomes]
rs6697248	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7511699	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7532148	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7545281	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9436394	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9436429	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9436430	0.81[ASN][1000 genomes]
rs9436749	0.83[ASN][1000 genomes]

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47705200-47766400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:47705600-47766400	Weak transcription	Primary T cells from cord blood	blood
3	chr1:47709800-47745000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:47712600-47735000	Weak transcription	NHDF-Ad	bronchial
5	chr1:47712600-47742600	Weak transcription	Fetal Lung	lung
6	chr1:47712800-47745600	Weak transcription	Fetal Brain Female	brain
7	chr1:47713000-47736400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:47713200-47745800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:47713800-47745800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr1:47714400-47779200	Weak transcription	Small Intestine	intestine
11	chr1:47714600-47745800	Weak transcription	Primary B cells from cord blood	blood
12	chr1:47714600-47778400	Weak transcription	Fetal Heart	heart
13	chr1:47714800-47741200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:47714800-47742800	Weak transcription	Fetal Kidney	kidney
15	chr1:47714800-47746000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:47715400-47740000	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr1:47715600-47749200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:47715800-47735400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:47716600-47739200	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr1:47716600-47772600	Strong transcription	Dnd41	blood
21	chr1:47716800-47739000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr1:47717000-47745800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr1:47718200-47746000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr1:47718800-47739800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr1:47719800-47745800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr1:47720400-47741400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr1:47720400-47757000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr1:47720600-47766400	Weak transcription	Brain Germinal Matrix	brain
29	chr1:47721000-47735400	Weak transcription	Fetal Muscle Leg	muscle
30	chr1:47721000-47749000	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr1:47721600-47766800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr1:47723400-47772400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr1:47724600-47739400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr1:47726000-47745200	Weak transcription	Fetal Intestine Large	intestine
35	chr1:47726200-47745800	Weak transcription	Primary hematopoietic stem cells	blood
36	chr1:47726400-47734800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr1:47726600-47734800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr1:47726600-47735400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr1:47726800-47735000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr1:47726800-47745200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr1:47727000-47745800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr1:47728200-47735200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr1:47728200-47742600	Weak transcription	GM12878-XiMat	blood
44	chr1:47728400-47745600	Weak transcription	NHLF	lung
45	chr1:47728600-47755200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr1:47729000-47735000	Weak transcription	Osteobl	bone
47	chr1:47729000-47738600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr1:47729000-47767000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr1:47729200-47746000	Weak transcription	Placenta	Placenta
50	chr1:47730000-47736600	Weak transcription	NHEK	skin

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