The 2.0 version of rSNPBase

Variant report

Variant rs56987466
Chromosome Location chr1:47778131-47778132
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:47714400-47779200 Weak transcription Small Intestine intestine
2 chr1:47714600-47778400 Weak transcription Fetal Heart heart
3 chr1:47735400-47779000 Weak transcription Esophagus oesophagus
4 chr1:47743800-47779200 Weak transcription Brain Hippocampus Middle brain
5 chr1:47744200-47779000 Weak transcription Brain Angular Gyrus brain
6 chr1:47744400-47779000 Weak transcription Brain Inferior Temporal Lobe brain
7 chr1:47744800-47779000 Weak transcription HSMMtube muscle
8 chr1:47746200-47778800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr1:47746600-47778400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
10 chr1:47746600-47778400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
11 chr1:47746600-47778400 Weak transcription Fetal Brain Female brain
12 chr1:47746800-47778800 Weak transcription Placenta Placenta
13 chr1:47750000-47779200 Weak transcription Right Atrium heart
14 chr1:47755200-47779000 Weak transcription Primary B cells from cord blood blood
15 chr1:47755400-47778800 Weak transcription Primary T helper cells fromperipheralblood blood
16 chr1:47763400-47778600 Weak transcription Adipose Nuclei Adipose
17 chr1:47763600-47779000 Weak transcription Skeletal Muscle Male skeletal muscle
18 chr1:47763600-47779200 Weak transcription Fetal Brain Male brain
19 chr1:47764200-47779000 Weak transcription Primary T regulatory cells fromperipheralblood blood
20 chr1:47764200-47779000 Weak transcription Stomach Mucosa stomach
21 chr1:47765600-47779000 Weak transcription Brain Anterior Caudate brain
22 chr1:47765800-47779200 Weak transcription Primary T helper naive cells from peripheral blood blood
23 chr1:47766800-47778400 Weak transcription Fetal Adrenal Gland Adrenal Gland
24 chr1:47767000-47778800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr1:47767400-47778600 Weak transcription Rectal Mucosa Donor 29 rectum
26 chr1:47767400-47778800 Weak transcription Breast Myoepithelial Primary Cells Breast
27 chr1:47767400-47779000 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr1:47767800-47779000 Weak transcription Primary T helper cells PMA-I stimulated --
29 chr1:47768000-47778200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr1:47768000-47778600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
31 chr1:47768000-47779200 Weak transcription Placenta Amnion Placenta Amnion
32 chr1:47768200-47778200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
33 chr1:47768200-47778600 Weak transcription Primary T cells from cord blood blood
34 chr1:47768400-47778200 Weak transcription Duodenum Mucosa Duodenum
35 chr1:47768400-47778400 Weak transcription Brain Germinal Matrix brain
36 chr1:47768400-47778400 Weak transcription Fetal Kidney kidney
37 chr1:47768400-47778600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
38 chr1:47768400-47778800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
39 chr1:47768600-47779000 Weak transcription Sigmoid Colon Sigmoid Colon
40 chr1:47768800-47778800 Weak transcription ES-WA7 Cell Line embryonic stem cell
41 chr1:47769000-47778200 Weak transcription NHDF-Ad bronchial
42 chr1:47769400-47778200 Weak transcription Cortex derived primary cultured neurospheres brain
43 chr1:47769400-47778400 Weak transcription Thymus Thymus
44 chr1:47770600-47778800 Weak transcription Rectal Mucosa Donor 31 rectum
45 chr1:47770800-47778600 Weak transcription Fetal Lung lung
46 chr1:47773000-47778400 Weak transcription Fetal Intestine Small intestine
47 chr1:47774400-47778200 Weak transcription ES-I3 Cell Line embryonic stem cell
48 chr1:47774400-47778200 Weak transcription iPS-15b Cell Line embryonic stem cell
49 chr1:47774400-47779000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
50 chr1:47775000-47778200 Strong transcription HUES48 Cell Line embryonic stem cell

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Last update: Aug 31, 2015