Variant report

Variant rs6671254
Chromosome Location chr1:47778520-47778521
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:47714400-47779200 Weak transcription Small Intestine intestine
2 chr1:47735400-47779000 Weak transcription Esophagus oesophagus
3 chr1:47743800-47779200 Weak transcription Brain Hippocampus Middle brain
4 chr1:47744200-47779000 Weak transcription Brain Angular Gyrus brain
5 chr1:47744400-47779000 Weak transcription Brain Inferior Temporal Lobe brain
6 chr1:47744800-47779000 Weak transcription HSMMtube muscle
7 chr1:47746200-47778800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr1:47746800-47778800 Weak transcription Placenta Placenta
9 chr1:47750000-47779200 Weak transcription Right Atrium heart
10 chr1:47755200-47779000 Weak transcription Primary B cells from cord blood blood
11 chr1:47755400-47778800 Weak transcription Primary T helper cells fromperipheralblood blood
12 chr1:47763400-47778600 Weak transcription Adipose Nuclei Adipose
13 chr1:47763600-47779000 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr1:47763600-47779200 Weak transcription Fetal Brain Male brain
15 chr1:47764200-47779000 Weak transcription Primary T regulatory cells fromperipheralblood blood
16 chr1:47764200-47779000 Weak transcription Stomach Mucosa stomach
17 chr1:47765600-47779000 Weak transcription Brain Anterior Caudate brain
18 chr1:47765800-47779200 Weak transcription Primary T helper naive cells from peripheral blood blood
19 chr1:47767000-47778800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr1:47767400-47778600 Weak transcription Rectal Mucosa Donor 29 rectum
21 chr1:47767400-47778800 Weak transcription Breast Myoepithelial Primary Cells Breast
22 chr1:47767400-47779000 Weak transcription Duodenum Smooth Muscle Duodenum
23 chr1:47767800-47779000 Weak transcription Primary T helper cells PMA-I stimulated --
24 chr1:47768000-47778600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
25 chr1:47768000-47779200 Weak transcription Placenta Amnion Placenta Amnion
26 chr1:47768200-47778600 Weak transcription Primary T cells from cord blood blood
27 chr1:47768400-47778600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
28 chr1:47768400-47778800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
29 chr1:47768600-47779000 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr1:47768800-47778800 Weak transcription ES-WA7 Cell Line embryonic stem cell
31 chr1:47770600-47778800 Weak transcription Rectal Mucosa Donor 31 rectum
32 chr1:47770800-47778600 Weak transcription Fetal Lung lung
33 chr1:47774400-47779000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
34 chr1:47775000-47778600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
35 chr1:47775800-47778600 Weak transcription Primary monocytes fromperipheralblood blood
36 chr1:47775800-47778600 Weak transcription Monocytes-CD14+_RO01746 blood
37 chr1:47776000-47778600 Weak transcription Primary neutrophils fromperipheralblood blood
38 chr1:47777000-47778800 Transcr. at gene 5' and 3' Dnd41 blood
39 chr1:47777800-47778600 Weak transcription Fetal Stomach stomach
40 chr1:47778000-47778600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
41 chr1:47778000-47778800 Flanking Active TSS HUVEC blood vessel
42 chr1:47778000-47778800 Flanking Active TSS NHLF lung
43 chr1:47778000-47779200 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
44 chr1:47778000-47780400 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
45 chr1:47778000-47780400 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr1:47778000-47780600 Active TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
47 chr1:47778000-47781200 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
48 chr1:47778200-47778600 Flanking Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr1:47778200-47778600 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr1:47778200-47778600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --

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