Variant report

Variant	rs61782733
Chromosome Location	chr1:47792054-47792055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:47790727..47792991-chr1:47798549..47800794,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162368	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10157883	0.82[ASN][1000 genomes]
rs1028646	0.81[ASN][1000 genomes]
rs1028647	0.81[ASN][1000 genomes]
rs10789507	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10890475	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10890476	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10890477	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10890478	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11211504	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11211508	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11211513	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11211520	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11211521	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11211522	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11211523	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11211524	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11578038	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11582877	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12024163	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12039726	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12040451	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12042624	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12046294	0.93[EUR][1000 genomes]
rs12047319	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12048407	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12409549	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12566521	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17418545	0.80[AMR][1000 genomes]
rs2306470	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2406105	0.84[ASN][1000 genomes]
rs2472730	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2472731	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2494247	0.81[ASN][1000 genomes]
rs2742099	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2742103	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2742104	0.82[ASN][1000 genomes]
rs2758735	0.81[ASN][1000 genomes]
rs2758737	0.81[ASN][1000 genomes]
rs2758744	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2821087	0.81[ASN][1000 genomes]
rs2821088	0.81[ASN][1000 genomes]
rs2821089	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2821090	0.81[ASN][1000 genomes]
rs2821092	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2897237	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3088062	0.86[ASN][1000 genomes]
rs3122607	0.83[ASN][1000 genomes]
rs3122611	0.81[ASN][1000 genomes]
rs3122615	0.83[ASN][1000 genomes]
rs3122616	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3122619	0.82[ASN][1000 genomes]
rs3122620	0.87[ASN][1000 genomes]
rs3122623	0.83[ASN][1000 genomes]
rs3125631	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3125632	0.85[ASN][1000 genomes]
rs3125635	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3125636	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3125641	0.82[ASN][1000 genomes]
rs3125644	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35880845	0.87[ASN][1000 genomes]
rs3923691	0.83[AMR][1000 genomes]
rs3925058	0.87[ASN][1000 genomes]
rs4463720	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4492666	0.87[ASN][1000 genomes]
rs4926836	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4926839	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56987466	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58688029	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59492977	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61284456	0.86[EUR][1000 genomes]
rs61782712	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61784774	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6660321	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6671254	0.82[ASN][1000 genomes]
rs6681868	0.83[ASN][1000 genomes]
rs6697248	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7511699	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7532148	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7541522	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7541748	0.87[ASN][1000 genomes]
rs7545281	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9436394	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9436429	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9436430	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9436749	0.82[ASN][1000 genomes]
rs9436882	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390574	chr1:47778981-47803091	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47780200-47798400	Weak transcription	Spleen	Spleen
2	chr1:47780600-47798000	Weak transcription	HSMMtube	muscle
3	chr1:47780800-47797800	Weak transcription	Fetal Muscle Leg	muscle
4	chr1:47788600-47792400	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr1:47789200-47792400	Enhancers	Duodenum Mucosa	Duodenum
6	chr1:47789800-47794400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:47789800-47796200	Weak transcription	K562	blood
8	chr1:47790200-47797400	Weak transcription	Fetal Intestine Large	intestine
9	chr1:47790600-47797000	Weak transcription	Pancreas	Pancrea
10	chr1:47790600-47797800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr1:47791200-47792400	Enhancers	Stomach Mucosa	stomach
12	chr1:47791800-47797600	Weak transcription	Fetal Intestine Small	intestine
13	chr1:47791800-47798200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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