The 2.0 version of rSNPBase

Variant report

Variant rs3122620
Chromosome Location chr1:47803319-47803320
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:47800400-47834600 Weak transcription Spleen Spleen
2 chr1:47800600-47806000 Weak transcription Ovary ovary
3 chr1:47800600-47808800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr1:47800600-47816000 Weak transcription Lung lung
5 chr1:47800600-47834400 Weak transcription Gastric stomach
6 chr1:47800600-47854600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr1:47800800-47814200 Weak transcription Aorta Aorta
8 chr1:47800800-47819600 Weak transcription Esophagus oesophagus
9 chr1:47801000-47803400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
10 chr1:47801000-47803600 Enhancers Fetal Brain Male brain
11 chr1:47801000-47803800 Weak transcription A549 lung
12 chr1:47801000-47805000 Weak transcription Brain Substantia Nigra brain
13 chr1:47801000-47808200 Weak transcription HUES64 Cell Line embryonic stem cell
14 chr1:47801000-47813800 Weak transcription Primary T cells from cord blood blood
15 chr1:47801000-47814600 Weak transcription Primary T killer naive cells fromperipheralblood blood
16 chr1:47801000-47815800 Weak transcription Osteobl bone
17 chr1:47801000-47816000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
18 chr1:47801000-47816800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
19 chr1:47801000-47819800 Weak transcription Brain Angular Gyrus brain
20 chr1:47801000-47834000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
21 chr1:47801000-47834200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
22 chr1:47801000-47834200 Weak transcription Brain Inferior Temporal Lobe brain
23 chr1:47801000-47834200 Weak transcription Thymus Thymus
24 chr1:47801000-47838200 Weak transcription NHDF-Ad bronchial
25 chr1:47801000-47850800 Weak transcription NHEK skin
26 chr1:47801200-47803800 Weak transcription Fetal Lung lung
27 chr1:47801200-47805000 Weak transcription Primary T helper naive cells fromperipheralblood blood
28 chr1:47801200-47805800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
29 chr1:47801200-47809000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr1:47801200-47813000 Weak transcription Primary hematopoietic stem cells blood
31 chr1:47801200-47814800 Weak transcription HSMM muscle
32 chr1:47801200-47817200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr1:47801200-47821400 Weak transcription Stomach Smooth Muscle stomach
34 chr1:47801200-47823400 Weak transcription Psoas Muscle Psoas
35 chr1:47801200-47834000 Weak transcription HMEC breast
36 chr1:47801200-47834200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
37 chr1:47801200-47834200 Weak transcription Brain Germinal Matrix brain
38 chr1:47801200-47834200 Weak transcription Fetal Brain Female brain
39 chr1:47801200-47834400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
40 chr1:47801200-47834600 Weak transcription HSMMtube muscle
41 chr1:47801200-47834600 Weak transcription NHLF lung
42 chr1:47801200-47839000 Weak transcription Right Ventricle heart
43 chr1:47801400-47803600 Weak transcription Liver Liver
44 chr1:47801400-47804000 Enhancers Dnd41 blood
45 chr1:47801400-47809000 Weak transcription Primary hematopoietic stem cells short term culture blood
46 chr1:47801400-47813200 Weak transcription Primary B cells from cord blood blood
47 chr1:47801400-47814000 Weak transcription Monocytes-CD14+_RO01746 blood
48 chr1:47801400-47816000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
49 chr1:47801400-47834200 Weak transcription Primary monocytes fromperipheralblood blood
50 chr1:47801600-47804000 Enhancers HepG2 liver

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Last update: Aug 31, 2015