The 2.0 version of rSNPBase

Variant report

Variant rs3125640
Chromosome Location chr1:47808744-47808745
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:88 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:47800400-47834600 Weak transcription Spleen Spleen
2 chr1:47800600-47808800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr1:47800600-47816000 Weak transcription Lung lung
4 chr1:47800600-47834400 Weak transcription Gastric stomach
5 chr1:47800600-47854600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr1:47800800-47814200 Weak transcription Aorta Aorta
7 chr1:47800800-47819600 Weak transcription Esophagus oesophagus
8 chr1:47801000-47813800 Weak transcription Primary T cells from cord blood blood
9 chr1:47801000-47814600 Weak transcription Primary T killer naive cells fromperipheralblood blood
10 chr1:47801000-47815800 Weak transcription Osteobl bone
11 chr1:47801000-47816000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
12 chr1:47801000-47816800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
13 chr1:47801000-47819800 Weak transcription Brain Angular Gyrus brain
14 chr1:47801000-47834000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
15 chr1:47801000-47834200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
16 chr1:47801000-47834200 Weak transcription Brain Inferior Temporal Lobe brain
17 chr1:47801000-47834200 Weak transcription Thymus Thymus
18 chr1:47801000-47838200 Weak transcription NHDF-Ad bronchial
19 chr1:47801000-47850800 Weak transcription NHEK skin
20 chr1:47801200-47809000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr1:47801200-47813000 Weak transcription Primary hematopoietic stem cells blood
22 chr1:47801200-47814800 Weak transcription HSMM muscle
23 chr1:47801200-47817200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr1:47801200-47821400 Weak transcription Stomach Smooth Muscle stomach
25 chr1:47801200-47823400 Weak transcription Psoas Muscle Psoas
26 chr1:47801200-47834000 Weak transcription HMEC breast
27 chr1:47801200-47834200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
28 chr1:47801200-47834200 Weak transcription Brain Germinal Matrix brain
29 chr1:47801200-47834200 Weak transcription Fetal Brain Female brain
30 chr1:47801200-47834400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
31 chr1:47801200-47834600 Weak transcription HSMMtube muscle
32 chr1:47801200-47834600 Weak transcription NHLF lung
33 chr1:47801200-47839000 Weak transcription Right Ventricle heart
34 chr1:47801400-47809000 Weak transcription Primary hematopoietic stem cells short term culture blood
35 chr1:47801400-47813200 Weak transcription Primary B cells from cord blood blood
36 chr1:47801400-47814000 Weak transcription Monocytes-CD14+_RO01746 blood
37 chr1:47801400-47816000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
38 chr1:47801400-47834200 Weak transcription Primary monocytes fromperipheralblood blood
39 chr1:47801600-47809600 Weak transcription Primary B cells from peripheral blood blood
40 chr1:47801600-47815000 Weak transcription Fetal Muscle Trunk muscle
41 chr1:47801800-47812000 Weak transcription Fetal Adrenal Gland Adrenal Gland
42 chr1:47801800-47834200 Weak transcription Placenta Placenta
43 chr1:47802000-47814000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr1:47802000-47834200 Weak transcription Cortex derived primary cultured neurospheres brain
45 chr1:47802200-47834200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
46 chr1:47802400-47813400 Weak transcription Rectal Mucosa Donor 31 rectum
47 chr1:47802400-47813800 Weak transcription Primary T cells fromperipheralblood blood
48 chr1:47802400-47815800 Weak transcription Breast Myoepithelial Primary Cells Breast
49 chr1:47802400-47816800 Weak transcription Primary T helper cells PMA-I stimulated --
50 chr1:47802400-47821800 Weak transcription Colon Smooth Muscle Colon

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Last update: Aug 31, 2015