The 2.0 version of rSNPBase

Variant report

Variant rs7523987
Chromosome Location chr1:47845595-47845596
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:47800600-47854600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:47801000-47850800 Weak transcription NHEK skin
3 chr1:47814800-47850600 Weak transcription Aorta Aorta
4 chr1:47823000-47846400 Weak transcription Colonic Mucosa Colon
5 chr1:47824000-47851000 Weak transcription Stomach Mucosa stomach
6 chr1:47824000-47853800 Weak transcription Psoas Muscle Psoas
7 chr1:47827800-47854800 Weak transcription Primary T killer memory cells from peripheral blood blood
8 chr1:47832200-47854200 Weak transcription Esophagus oesophagus
9 chr1:47833200-47852000 Weak transcription Placenta Amnion Placenta Amnion
10 chr1:47833600-47854200 Weak transcription H9 Cell Line embryonic stem cell
11 chr1:47833600-47854200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
12 chr1:47834000-47847400 Strong transcription Primary T helper cells fromperipheralblood blood
13 chr1:47834000-47847600 Strong transcription Primary T regulatory cells fromperipheralblood blood
14 chr1:47834000-47847600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr1:47834000-47849200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr1:47834000-47849200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
17 chr1:47834000-47849200 Strong transcription Dnd41 blood
18 chr1:47834000-47849400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
19 chr1:47834200-47847000 Strong transcription Primary T cells fromperipheralblood blood
20 chr1:47834200-47847600 Strong transcription Primary monocytes fromperipheralblood blood
21 chr1:47834200-47847600 Strong transcription Primary T helper cells PMA-I stimulated --
22 chr1:47834200-47848000 Strong transcription HSMM muscle
23 chr1:47834200-47849200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
24 chr1:47834200-47849400 Strong transcription Duodenum Mucosa Duodenum
25 chr1:47834200-47849400 Strong transcription Rectal Mucosa Donor 29 rectum
26 chr1:47834200-47849400 Strong transcription Monocytes-CD14+_RO01746 blood
27 chr1:47834200-47850200 Strong transcription Breast Myoepithelial Primary Cells Breast
28 chr1:47835000-47846600 Weak transcription Gastric stomach
29 chr1:47835200-47853400 Weak transcription NHLF lung
30 chr1:47835200-47853600 Weak transcription Fetal Brain Male brain
31 chr1:47835400-47849800 Weak transcription Fetal Heart heart
32 chr1:47835400-47853200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
33 chr1:47836000-47846600 Weak transcription Brain Anterior Caudate brain
34 chr1:47836000-47850200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
35 chr1:47836400-47846400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
36 chr1:47836400-47854400 Weak transcription Brain Cingulate Gyrus brain
37 chr1:47836600-47852800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
38 chr1:47836600-47854800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
39 chr1:47837000-47846400 Weak transcription Small Intestine intestine
40 chr1:47837200-47846400 Weak transcription Fetal Kidney kidney
41 chr1:47837200-47847600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr1:47837200-47853200 Weak transcription A549 lung
43 chr1:47839200-47849400 Strong transcription Fetal Adrenal Gland Adrenal Gland
44 chr1:47839400-47854200 Weak transcription Pancreas Pancrea
45 chr1:47839400-47854200 Weak transcription Right Ventricle heart
46 chr1:47840000-47853400 Weak transcription Fetal Intestine Small intestine
47 chr1:47840200-47854200 Weak transcription Rectal Smooth Muscle rectum
48 chr1:47840400-47848400 Strong transcription Primary B cells from cord blood blood
49 chr1:47840800-47846600 Weak transcription Primary T killer naive cells fromperipheralblood blood
50 chr1:47841000-47850800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015