The 2.0 version of rSNPBase

Variant report

Variant rs2622926
Chromosome Location chr1:47852791-47852792
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:47800600-47854600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:47824000-47853800 Weak transcription Psoas Muscle Psoas
3 chr1:47827800-47854800 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr1:47832200-47854200 Weak transcription Esophagus oesophagus
5 chr1:47833600-47854200 Weak transcription H9 Cell Line embryonic stem cell
6 chr1:47833600-47854200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr1:47835200-47853400 Weak transcription NHLF lung
8 chr1:47835200-47853600 Weak transcription Fetal Brain Male brain
9 chr1:47835400-47853200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
10 chr1:47836400-47854400 Weak transcription Brain Cingulate Gyrus brain
11 chr1:47836600-47852800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr1:47836600-47854800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
13 chr1:47837200-47853200 Weak transcription A549 lung
14 chr1:47839400-47854200 Weak transcription Pancreas Pancrea
15 chr1:47839400-47854200 Weak transcription Right Ventricle heart
16 chr1:47840000-47853400 Weak transcription Fetal Intestine Small intestine
17 chr1:47840200-47854200 Weak transcription Rectal Smooth Muscle rectum
18 chr1:47841400-47854200 Weak transcription Cortex derived primary cultured neurospheres brain
19 chr1:47841400-47854200 Weak transcription Brain Angular Gyrus brain
20 chr1:47841600-47854800 Weak transcription Brain Hippocampus Middle brain
21 chr1:47844600-47853800 Weak transcription Hela-S3 cervix
22 chr1:47845400-47854400 Weak transcription HMEC breast
23 chr1:47845600-47854400 Weak transcription Brain Inferior Temporal Lobe brain
24 chr1:47846400-47853400 Weak transcription Fetal Stomach stomach
25 chr1:47846800-47853200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
26 chr1:47846800-47854200 Weak transcription Gastric stomach
27 chr1:47847000-47854400 Weak transcription Colonic Mucosa Colon
28 chr1:47847000-47854600 Weak transcription Primary T cells fromperipheralblood blood
29 chr1:47847000-47854600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
30 chr1:47847200-47853000 Weak transcription NHDF-Ad bronchial
31 chr1:47847200-47854200 Weak transcription Brain Anterior Caudate brain
32 chr1:47847200-47854200 Weak transcription Skeletal Muscle Male skeletal muscle
33 chr1:47847400-47853400 Weak transcription Fetal Lung lung
34 chr1:47847400-47854200 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr1:47847400-47858600 Weak transcription Muscle Satellite Cultured Cells --
36 chr1:47847600-47853600 Weak transcription Rectal Mucosa Donor 31 rectum
37 chr1:47847600-47853600 Weak transcription Osteobl bone
38 chr1:47847600-47854200 Weak transcription Fetal Brain Female brain
39 chr1:47847600-47854200 Weak transcription Fetal Kidney kidney
40 chr1:47847600-47854800 Weak transcription Stomach Smooth Muscle stomach
41 chr1:47847600-47858800 Weak transcription HSMMtube muscle
42 chr1:47847600-47865200 Weak transcription GM12878-XiMat blood
43 chr1:47847600-47872800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr1:47847800-47853400 Weak transcription Fetal Intestine Large intestine
45 chr1:47848000-47854200 Weak transcription HSMM muscle
46 chr1:47848400-47854400 Weak transcription Duodenum Smooth Muscle Duodenum
47 chr1:47848600-47853400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
48 chr1:47849000-47854400 Weak transcription Liver Liver
49 chr1:47849200-47853200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
50 chr1:47849200-47853600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow

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Last update: Aug 31, 2015