Variant report

Variant	rs56391477
Chromosome Location	chr1:47855358-47855359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10437097	0.81[ASN][1000 genomes]
rs1044457	0.88[ASN][1000 genomes]
rs12119783	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12121831	0.85[ASN][1000 genomes]
rs12127982	0.88[ASN][1000 genomes]
rs12562561	0.85[ASN][1000 genomes]
rs12731806	0.88[ASN][1000 genomes]
rs17370337	0.88[ASN][1000 genomes]
rs2622926	0.87[ASN][1000 genomes]
rs55737131	0.86[ASN][1000 genomes]
rs56270164	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56328227	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60399248	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6662814	0.80[EUR][1000 genomes]
rs6795	0.88[ASN][1000 genomes]
rs72686249	0.88[ASN][1000 genomes]
rs7523987	0.88[ASN][1000 genomes]
rs7533562	0.88[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs56391477	CMPK	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47847400-47858600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr1:47847600-47858800	Weak transcription	HSMMtube	muscle
3	chr1:47847600-47865200	Weak transcription	GM12878-XiMat	blood
4	chr1:47847600-47872800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:47849200-47855800	Weak transcription	Dnd41	blood
6	chr1:47849400-47856200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:47849400-47858800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:47849600-47856000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr1:47853000-47856000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:47853200-47857400	Enhancers	HepG2	liver
11	chr1:47853400-47856600	Enhancers	Fetal Intestine Large	intestine
12	chr1:47853400-47856600	Enhancers	Fetal Intestine Small	intestine
13	chr1:47853600-47855600	Enhancers	Adipose Nuclei	Adipose
14	chr1:47854200-47857200	Enhancers	Duodenum Mucosa	Duodenum
15	chr1:47854400-47855600	Enhancers	Colonic Mucosa	Colon
16	chr1:47855000-47855400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr1:47855000-47856400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:47855000-47858400	Weak transcription	HSMM	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links