Variant report

Variant	rs56328227
Chromosome Location	chr1:47855170-47855171
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:47854429..47856200-chr1:47870226..47871822,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10437097	0.86[ASN][1000 genomes]
rs1044457	0.95[AFR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12118514	0.84[ASN][1000 genomes]
rs12119783	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121831	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12126139	0.84[ASN][1000 genomes]
rs12127982	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12138072	0.82[ASN][1000 genomes]
rs12141060	0.81[AFR][1000 genomes]
rs12562561	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12731806	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12732050	0.84[ASN][1000 genomes]
rs17370337	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17452995	0.84[ASN][1000 genomes]
rs2622926	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34400183	0.82[ASN][1000 genomes]
rs34952704	0.84[ASN][1000 genomes]
rs35711761	0.81[AFR][1000 genomes]
rs4926824	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs55737131	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs56270164	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56391477	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60399248	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6662814	0.89[EUR][1000 genomes]
rs6692734	0.87[AFR][1000 genomes]
rs6703956	0.87[AFR][1000 genomes]
rs6795	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72686249	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7523987	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7533562	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs56328227	CMPK	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47847400-47858600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr1:47847600-47858800	Weak transcription	HSMMtube	muscle
3	chr1:47847600-47865200	Weak transcription	GM12878-XiMat	blood
4	chr1:47847600-47872800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:47849200-47855800	Weak transcription	Dnd41	blood
6	chr1:47849400-47856200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:47849400-47858800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:47849600-47856000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr1:47853000-47856000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:47853200-47857400	Enhancers	HepG2	liver
11	chr1:47853400-47855200	Enhancers	Fetal Stomach	stomach
12	chr1:47853400-47856600	Enhancers	Fetal Intestine Large	intestine
13	chr1:47853400-47856600	Enhancers	Fetal Intestine Small	intestine
14	chr1:47853600-47855600	Enhancers	Adipose Nuclei	Adipose
15	chr1:47854000-47855200	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr1:47854200-47857200	Enhancers	Duodenum Mucosa	Duodenum
17	chr1:47854400-47855600	Enhancers	Colonic Mucosa	Colon
18	chr1:47855000-47855400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr1:47855000-47856400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr1:47855000-47858400	Weak transcription	HSMM	muscle

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