The 2.0 version of rSNPBase

Variant report

Variant rs10890476
Chromosome Location chr1:47774266-47774267
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:47714400-47779200 Weak transcription Small Intestine intestine
2 chr1:47714600-47778400 Weak transcription Fetal Heart heart
3 chr1:47731400-47778000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr1:47735400-47779000 Weak transcription Esophagus oesophagus
5 chr1:47743800-47779200 Weak transcription Brain Hippocampus Middle brain
6 chr1:47744200-47779000 Weak transcription Brain Angular Gyrus brain
7 chr1:47744400-47779000 Weak transcription Brain Inferior Temporal Lobe brain
8 chr1:47744800-47779000 Weak transcription HSMMtube muscle
9 chr1:47746200-47778800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
10 chr1:47746600-47776400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
11 chr1:47746600-47778400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
12 chr1:47746600-47778400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
13 chr1:47746600-47778400 Weak transcription Fetal Brain Female brain
14 chr1:47746800-47778800 Weak transcription Placenta Placenta
15 chr1:47749600-47777800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr1:47750000-47779200 Weak transcription Right Atrium heart
17 chr1:47755200-47779000 Weak transcription Primary B cells from cord blood blood
18 chr1:47755400-47778800 Weak transcription Primary T helper cells fromperipheralblood blood
19 chr1:47763400-47778600 Weak transcription Adipose Nuclei Adipose
20 chr1:47763600-47779000 Weak transcription Skeletal Muscle Male skeletal muscle
21 chr1:47763600-47779200 Weak transcription Fetal Brain Male brain
22 chr1:47764200-47779000 Weak transcription Primary T regulatory cells fromperipheralblood blood
23 chr1:47764200-47779000 Weak transcription Stomach Mucosa stomach
24 chr1:47765400-47777400 Strong transcription Primary hematopoietic stem cells short term culture blood
25 chr1:47765600-47779000 Weak transcription Brain Anterior Caudate brain
26 chr1:47765800-47779200 Weak transcription Primary T helper naive cells from peripheral blood blood
27 chr1:47766800-47778400 Weak transcription Fetal Adrenal Gland Adrenal Gland
28 chr1:47767000-47778800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr1:47767400-47775200 Weak transcription Muscle Satellite Cultured Cells --
30 chr1:47767400-47778000 Weak transcription NHLF lung
31 chr1:47767400-47778600 Weak transcription Rectal Mucosa Donor 29 rectum
32 chr1:47767400-47778800 Weak transcription Breast Myoepithelial Primary Cells Breast
33 chr1:47767400-47779000 Weak transcription Duodenum Smooth Muscle Duodenum
34 chr1:47767800-47779000 Weak transcription Primary T helper cells PMA-I stimulated --
35 chr1:47768000-47778200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr1:47768000-47778600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
37 chr1:47768000-47779200 Weak transcription Placenta Amnion Placenta Amnion
38 chr1:47768200-47778200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
39 chr1:47768200-47778600 Weak transcription Primary T cells from cord blood blood
40 chr1:47768400-47775200 Weak transcription Hela-S3 cervix
41 chr1:47768400-47775200 Weak transcription NH-A brain
42 chr1:47768400-47775400 Weak transcription Fetal Intestine Large intestine
43 chr1:47768400-47778200 Weak transcription Duodenum Mucosa Duodenum
44 chr1:47768400-47778400 Weak transcription Brain Germinal Matrix brain
45 chr1:47768400-47778400 Weak transcription Fetal Kidney kidney
46 chr1:47768400-47778600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
47 chr1:47768400-47778800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
48 chr1:47768600-47775000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
49 chr1:47768600-47779000 Weak transcription Sigmoid Colon Sigmoid Colon
50 chr1:47768800-47778800 Weak transcription ES-WA7 Cell Line embryonic stem cell

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Last update: Aug 31, 2015