Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10779539	1.00[AMR][1000 genomes]
rs10863846	1.00[AMR][1000 genomes]
rs11119545	1.00[AMR][1000 genomes]
rs11119548	1.00[AMR][1000 genomes]
rs12145420	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12728928	1.00[YRI][hapmap]
rs4240838	1.00[AMR][1000 genomes]
rs4326622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4357526	1.00[AMR][1000 genomes]
rs4369231	1.00[AMR][1000 genomes]
rs4402133	1.00[AMR][1000 genomes]
rs4405138	0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4528195	1.00[AMR][1000 genomes]
rs4565714	1.00[AMR][1000 genomes]
rs4845056	1.00[AMR][1000 genomes]
rs4845057	1.00[ASW][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4845058	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4845059	1.00[AMR][1000 genomes]
rs4845060	1.00[AMR][1000 genomes]
rs4845061	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4845062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4845063	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4845064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6540608	1.00[AMR][1000 genomes]
rs6540609	1.00[AMR][1000 genomes]
rs6682840	0.89[ASW][hapmap];0.95[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6693375	0.87[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9699912	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873149	chr1:210749312-210793972	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210756200-210771800	Weak transcription	Left Ventricle	heart
2	chr1:210761400-210771600	Weak transcription	Gastric	stomach
3	chr1:210761600-210770400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:210762400-210770400	Weak transcription	HSMM	muscle
5	chr1:210762800-210764200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:210763000-210763600	Genic enhancers	HSMMtube	muscle
7	chr1:210763000-210763800	Enhancers	Brain Cingulate Gyrus	brain
8	chr1:210763200-210763600	Enhancers	Brain Anterior Caudate	brain
9	chr1:210763200-210763600	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr1:210763200-210763800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:210763200-210763800	Enhancers	Brain Angular Gyrus	brain
12	chr1:210763200-210764200	Enhancers	Brain Substantia Nigra	brain
13	chr1:210763200-210769600	Weak transcription	A549	lung
14	chr1:210763200-210770400	Weak transcription	Osteobl	bone
15	chr1:210763400-210763600	Active TSS	Brain Hippocampus Middle	brain
16	chr1:210763400-210763800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:210763400-210765200	Weak transcription	Ovary	ovary

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