Variant report

Variant	rs6694535
Chromosome Location	chr1:95447933-95447934
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95442287..95445086-chr1:95447499..95449061,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10782996	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1246349	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2391388	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2391389	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2766010	0.86[ASN][1000 genomes]
rs2766011	0.87[ASN][1000 genomes]
rs2797622	0.87[ASN][1000 genomes]
rs2797623	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2893274	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4259714	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6675668	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6698046	0.92[ASN][1000 genomes]
rs7533303	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7537374	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7539139	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7547662	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9437672	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9437810	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95422000-95450800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:95429000-95467600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr1:95436600-95451200	Weak transcription	Small Intestine	intestine
4	chr1:95436800-95448600	Weak transcription	Brain Angular Gyrus	brain
5	chr1:95437600-95455600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:95437800-95455000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:95437800-95458400	Weak transcription	Liver	Liver
8	chr1:95439600-95448600	Weak transcription	Right Ventricle	heart
9	chr1:95440200-95450600	Weak transcription	Colon Smooth Muscle	Colon
10	chr1:95440800-95448800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr1:95445000-95448600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr1:95445200-95449200	Enhancers	Fetal Muscle Leg	muscle
13	chr1:95445200-95450000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr1:95445400-95448600	Enhancers	HSMM	muscle
15	chr1:95445400-95449000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr1:95445400-95449400	Enhancers	HUVEC	blood vessel
17	chr1:95445800-95448200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr1:95446000-95448200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr1:95446000-95448600	Enhancers	NH-A	brain
20	chr1:95446200-95448000	Weak transcription	Brain Substantia Nigra	brain
21	chr1:95446400-95448200	Enhancers	Primary B cells from cord blood	blood
22	chr1:95446400-95448400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:95446400-95448600	Weak transcription	Primary T cells from cord blood	blood
24	chr1:95446800-95448000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr1:95446800-95448000	Weak transcription	Primary B cells from peripheral blood	blood
26	chr1:95446800-95448000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr1:95446800-95448000	Weak transcription	HMEC	breast
28	chr1:95446800-95448000	Weak transcription	NHLF	lung
29	chr1:95446800-95448400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr1:95446800-95448600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr1:95446800-95449000	Weak transcription	Fetal Heart	heart
32	chr1:95446800-95455000	Weak transcription	Left Ventricle	heart
33	chr1:95446800-95457800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr1:95447000-95448000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr1:95447000-95448000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr1:95447000-95448000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr1:95447000-95448000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr1:95447000-95448000	Weak transcription	NHDF-Ad	bronchial
39	chr1:95447000-95448000	Weak transcription	Osteobl	bone
40	chr1:95447000-95448400	Weak transcription	Duodenum Mucosa	Duodenum
41	chr1:95447000-95448400	Weak transcription	HSMMtube	muscle
42	chr1:95447000-95448600	Weak transcription	Right Atrium	heart
43	chr1:95447000-95448800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr1:95447000-95448800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr1:95447000-95452200	Weak transcription	Fetal Intestine Small	intestine
46	chr1:95447000-95490800	Weak transcription	Fetal Intestine Large	intestine
47	chr1:95447400-95448000	Enhancers	Fetal Muscle Trunk	muscle
48	chr1:95447600-95448200	Weak transcription	HepG2	liver
49	chr1:95447600-95448400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr1:95447600-95448600	Weak transcription	Primary hematopoietic stem cells	blood

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