Variant report
| Variant | rs6697556 |
|---|---|
| Chromosome Location | chr1:197387288-197387289 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000101040 | Chromatin interaction |
| ENSG00000231119 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs11799366 | 1.00[AMR][1000 genomes] |
| rs11800199 | 1.00[AMR][1000 genomes] |
| rs11802964 | 1.00[AMR][1000 genomes] |
| rs11803371 | 1.00[AMR][1000 genomes] |
| rs11804057 | 1.00[AMR][1000 genomes] |
| rs11805327 | 1.00[AMR][1000 genomes] |
| rs11805755 | 1.00[AMR][1000 genomes] |
| rs11805909 | 1.00[AMR][1000 genomes] |
| rs11806221 | 1.00[AMR][1000 genomes] |
| rs11806278 | 1.00[AMR][1000 genomes] |
| rs11806385 | 1.00[AMR][1000 genomes] |
| rs11807556 | 1.00[AMR][1000 genomes] |
| rs11807717 | 1.00[AMR][1000 genomes] |
| rs11808659 | 1.00[AMR][1000 genomes] |
| rs11809220 | 1.00[AMR][1000 genomes] |
| rs11809987 | 1.00[AMR][1000 genomes] |
| rs16841475 | 1.00[AMR][1000 genomes] |
| rs16841531 | 1.00[AMR][1000 genomes] |
| rs16841850 | 1.00[AMR][1000 genomes] |
| rs34240488 | 1.00[AMR][1000 genomes] |
| rs3888103 | 1.00[AMR][1000 genomes] |
| rs6428399 | 1.00[AMR][1000 genomes] |
| rs6428400 | 1.00[AMR][1000 genomes] |
| rs6657488 | 1.00[AMR][1000 genomes] |
| rs6666890 | 1.00[AMR][1000 genomes] |
| rs6667162 | 1.00[AMR][1000 genomes] |
| rs6667565 | 1.00[AMR][1000 genomes] |
| rs6703514 | 1.00[AMR][1000 genomes] |
| rs6703515 | 1.00[AMR][1000 genomes] |
| rs7522037 | 1.00[AMR][1000 genomes] |
| rs7533154 | 1.00[AMR][1000 genomes] |
| rs7535981 | 1.00[AMR][1000 genomes] |
| rs7543290 | 1.00[AMR][1000 genomes] |
| rs7554788 | 1.00[AMR][1000 genomes] |
| rs9661515 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv528460 | chr1:196542567-197446702 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| 2 | nsv1014039 | chr1:197311285-197529212 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:197385600-197390600 | Weak transcription | Fetal Brain Female | brain |
