Variant report

Variant	rs6703515
Chromosome Location	chr1:197510703-197510704
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11799366	1.00[AMR][1000 genomes]
rs11800199	1.00[AMR][1000 genomes]
rs11801895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11802251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11802844	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11802940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11802964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11803371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11803914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11804057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11804072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11804259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11805327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11805399	1.00[AFR][1000 genomes]
rs11805755	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11805812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11805909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11806221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11806278	1.00[AMR][1000 genomes]
rs11806385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11806492	1.00[AFR][1000 genomes]
rs11806557	1.00[AFR][1000 genomes]
rs11806645	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11806651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11806821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11806872	1.00[AFR][1000 genomes]
rs11807556	1.00[AMR][1000 genomes]
rs11807717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11808659	0.83[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11809220	1.00[AMR][1000 genomes]
rs11809987	1.00[AMR][1000 genomes]
rs11810711	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11811376	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16841475	1.00[AMR][1000 genomes]
rs16841531	1.00[AMR][1000 genomes]
rs16841850	1.00[AMR][1000 genomes]
rs16841865	1.00[AMR][1000 genomes]
rs16841889	1.00[AMR][1000 genomes]
rs34240488	1.00[AMR][1000 genomes]
rs35781299	1.00[AMR][1000 genomes]
rs3888103	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs6428399	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs6428400	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs6657488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6666890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6667162	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs6667565	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6697556	1.00[AMR][1000 genomes]
rs6698391	1.00[AFR][1000 genomes]
rs6703514	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7522037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7533154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7535981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7543290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7554788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9661515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9727335	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014039	chr1:197311285-197529212	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv521647	chr1:197464448-197529218	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv873074	chr1:197464448-197698103	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv873075	chr1:197464448-197714851	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv4010	chr1:197471463-197511397	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197478000-197541200	Weak transcription	Aorta	Aorta
2	chr1:197480000-197535800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr1:197480200-197541200	Weak transcription	Esophagus	oesophagus
4	chr1:197480200-197541200	Weak transcription	Fetal Thymus	thymus
5	chr1:197480400-197541200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr1:197481200-197513400	Weak transcription	Adipose Nuclei	Adipose
7	chr1:197481400-197529600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr1:197487800-197536000	Weak transcription	Fetal Lung	lung
9	chr1:197491600-197520800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:197495200-197510800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr1:197496200-197532400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr1:197500600-197529400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr1:197502200-197531800	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr1:197502400-197534600	Weak transcription	Fetal Intestine Large	intestine
15	chr1:197503200-197524000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:197503200-197526400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:197503200-197541200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr1:197503600-197514400	Weak transcription	Right Ventricle	heart
19	chr1:197503600-197535800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr1:197504200-197529000	Weak transcription	Fetal Intestine Small	intestine
21	chr1:197505400-197532400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr1:197505600-197541000	Weak transcription	Pancreas	Pancrea
23	chr1:197506000-197513800	Weak transcription	Colon Smooth Muscle	Colon
24	chr1:197506200-197526000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:197506400-197535800	Weak transcription	Primary B cells from peripheral blood	blood
26	chr1:197506600-197537600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr1:197506800-197535600	Weak transcription	Primary B cells from cord blood	blood
28	chr1:197506800-197564600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr1:197507200-197519000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr1:197508400-197522400	Weak transcription	Dnd41	blood
31	chr1:197508400-197602400	Weak transcription	Left Ventricle	heart
32	chr1:197508600-197528400	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr1:197508600-197532200	Weak transcription	Primary T cells from cord blood	blood
34	chr1:197509000-197511000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr1:197509000-197514000	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr1:197509000-197529600	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr1:197509200-197529200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr1:197509200-197529600	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr1:197509200-197535600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr1:197509200-197535600	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr1:197509400-197513800	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr1:197509400-197536000	Weak transcription	Liver	Liver
43	chr1:197509800-197511200	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr1:197509800-197511400	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr1:197510000-197511200	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr1:197510000-197511400	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr1:197510000-197511400	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr1:197510000-197511800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr1:197510200-197513800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr1:197510400-197510800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links