The 2.0 version of rSNPBase

Variant report

Variant rs11805399
Chromosome Location chr1:197723462-197723463
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:197695800-197732800 Weak transcription Rectal Mucosa Donor 31 rectum
2 chr1:197695800-197742200 Weak transcription Duodenum Smooth Muscle Duodenum
3 chr1:197702800-197743800 Weak transcription Esophagus oesophagus
4 chr1:197706600-197729400 Weak transcription Breast Myoepithelial Primary Cells Breast
5 chr1:197706800-197741800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
6 chr1:197708400-197729800 Weak transcription NHEK skin
7 chr1:197710400-197724000 Weak transcription Primary T helper naive cells from peripheral blood blood
8 chr1:197712200-197731000 Weak transcription Primary monocytes fromperipheralblood blood
9 chr1:197712200-197741600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
10 chr1:197712200-197742000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
11 chr1:197713000-197732800 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr1:197713000-197734000 Weak transcription Fetal Thymus thymus
13 chr1:197713800-197733000 Weak transcription Aorta Aorta
14 chr1:197714400-197731600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr1:197714400-197743800 Weak transcription Spleen Spleen
16 chr1:197714600-197726400 Weak transcription Right Ventricle heart
17 chr1:197714600-197727400 Weak transcription Primary T killer memory cells from peripheral blood blood
18 chr1:197714600-197729800 Weak transcription Primary hematopoietic stem cells blood
19 chr1:197714600-197730000 Weak transcription Primary B cells from cord blood blood
20 chr1:197714600-197741600 Weak transcription Primary T cells fromperipheralblood blood
21 chr1:197714600-197742400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
22 chr1:197714600-197743600 Weak transcription Ovary ovary
23 chr1:197715000-197727200 Weak transcription Rectal Smooth Muscle rectum
24 chr1:197715400-197740000 Weak transcription Left Ventricle heart
25 chr1:197715400-197741800 Weak transcription Gastric stomach
26 chr1:197715600-197738400 Weak transcription Pancreas Pancrea
27 chr1:197716800-197731400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
28 chr1:197716800-197737000 Weak transcription Duodenum Mucosa Duodenum
29 chr1:197717000-197730400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
30 chr1:197717000-197737200 Weak transcription Skeletal Muscle Female skeletal muscle
31 chr1:197717800-197727400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr1:197718400-197732000 Weak transcription K562 blood
33 chr1:197718400-197740200 Weak transcription NHDF-Ad bronchial
34 chr1:197718600-197741800 Weak transcription Osteobl bone
35 chr1:197719200-197743800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
36 chr1:197720000-197731200 Weak transcription Primary T killer naive cells fromperipheralblood blood
37 chr1:197720200-197725000 Weak transcription Primary T helper cells fromperipheralblood blood
38 chr1:197720200-197730800 Weak transcription Primary T helper cells PMA-I stimulated --
39 chr1:197720200-197731400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
40 chr1:197720200-197740600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr1:197720400-197726400 Weak transcription Primary T regulatory cells fromperipheralblood blood
42 chr1:197720400-197728800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr1:197720400-197730400 Weak transcription Primary T cells from cord blood blood
44 chr1:197720600-197725400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
45 chr1:197720800-197724400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
46 chr1:197721200-197743000 Weak transcription Fetal Kidney kidney
47 chr1:197721600-197724200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr1:197722000-197724400 Strong transcription Dnd41 blood
49 chr1:197722400-197724200 Strong transcription Monocytes-CD14+_RO01746 blood
50 chr1:197722600-197740800 Weak transcription Fetal Lung lung

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Last update: Aug 31, 2015