Variant report
| Variant | rs11800936 |
|---|---|
| Chromosome Location | chr1:197845866-197845867 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:197844025..197847806-chr1:197870226..197873656,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000203724 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11799471 | 1.00[AFR][1000 genomes] |
| rs11801895 | 0.82[AFR][1000 genomes] |
| rs11802251 | 0.82[AFR][1000 genomes] |
| rs11802940 | 0.82[AFR][1000 genomes] |
| rs11803914 | 0.82[AFR][1000 genomes] |
| rs11804072 | 0.82[AFR][1000 genomes] |
| rs11804259 | 0.82[AFR][1000 genomes] |
| rs11805399 | 0.83[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs11805812 | 0.82[AFR][1000 genomes] |
| rs11806492 | 0.82[AFR][1000 genomes] |
| rs11806557 | 0.83[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs11806645 | 0.82[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs11806651 | 0.82[AFR][1000 genomes] |
| rs11806821 | 0.82[AFR][1000 genomes] |
| rs11806872 | 0.82[AFR][1000 genomes] |
| rs11808140 | 0.91[AFR][1000 genomes] |
| rs11810711 | 0.82[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs11811376 | 0.83[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs6698391 | 0.82[AFR][1000 genomes] |
| rs6704185 | 0.91[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999662 | chr1:197821769-197892803 | Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 14 gene(s) | inside rSNPs | diseases |
| 2 | esv2762214 | chr1:197821769-197897496 | Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive region | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv1004130 | chr1:197822757-197879728 | Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 13 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
