Variant report
Variant | rs11799471 |
---|---|
Chromosome Location | chr1:197821839-197821840 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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(count:2 , 50 per page) page:
1
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rs_ID | r2[population] |
---|---|
rs11800936 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
rs11801895 | 0.82[AFR][1000 genomes] |
rs11802251 | 0.82[AFR][1000 genomes] |
rs11802844 | 0.83[YRI][hapmap] |
rs11802940 | 0.82[AFR][1000 genomes] |
rs11803914 | 0.82[AFR][1000 genomes] |
rs11804072 | 0.82[AFR][1000 genomes] |
rs11804259 | 0.82[AFR][1000 genomes] |
rs11805399 | 0.83[YRI][hapmap];0.82[AFR][1000 genomes] |
rs11805812 | 0.82[AFR][1000 genomes] |
rs11806492 | 0.82[AFR][1000 genomes] |
rs11806557 | 0.83[YRI][hapmap];0.82[AFR][1000 genomes] |
rs11806645 | 0.82[YRI][hapmap];0.82[AFR][1000 genomes] |
rs11806651 | 0.82[AFR][1000 genomes] |
rs11806821 | 0.82[AFR][1000 genomes] |
rs11806872 | 0.82[AFR][1000 genomes] |
rs11808140 | 0.91[AFR][1000 genomes] |
rs11810711 | 0.82[YRI][hapmap];0.82[AFR][1000 genomes] |
rs11811376 | 0.83[YRI][hapmap];0.82[AFR][1000 genomes] |
rs6698391 | 0.82[AFR][1000 genomes] |
rs6704185 | 0.91[AFR][1000 genomes] |
rs9661515 | 0.82[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1009697 | chr1:197804294-197825037 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
2 | nsv999662 | chr1:197821769-197892803 | Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 14 gene(s) | inside rSNPs | diseases |
3 | esv2762214 | chr1:197821769-197897496 | Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive region | 14 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:197821600-197822800 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |