The 2.0 version of rSNPBase

Variant report

Variant rs11806872
Chromosome Location chr1:197747475-197747476
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:197744600-197751200 Weak transcription Small Intestine intestine
2 chr1:197745200-197748200 Enhancers Primary B cells from cord blood blood
3 chr1:197745200-197748400 Enhancers Dnd41 blood
4 chr1:197745200-197748800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
5 chr1:197745200-197752800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
6 chr1:197745200-197756800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr1:197745400-197747600 Enhancers Primary T killer memory cells from peripheral blood blood
8 chr1:197745400-197749000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr1:197745400-197751200 Weak transcription Placenta Amnion Placenta Amnion
10 chr1:197745400-197752000 Weak transcription Esophagus oesophagus
11 chr1:197745600-197747600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
12 chr1:197745600-197748200 Enhancers Primary T helper 17 cells PMA-I stimulated --
13 chr1:197745600-197748200 Enhancers Primary T regulatory cells fromperipheralblood blood
14 chr1:197745600-197748200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr1:197745600-197748200 Enhancers Rectal Mucosa Donor 31 rectum
16 chr1:197745600-197748600 Enhancers Primary T helper naive cells from peripheral blood blood
17 chr1:197745600-197751000 Weak transcription NHLF lung
18 chr1:197745800-197751000 Weak transcription Stomach Mucosa stomach
19 chr1:197745800-197751400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
20 chr1:197746000-197748200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
21 chr1:197746000-197748400 Enhancers Primary T helper cells PMA-I stimulated --
22 chr1:197746000-197751000 Weak transcription Fetal Intestine Large intestine
23 chr1:197746000-197751200 Weak transcription Fetal Intestine Small intestine
24 chr1:197746000-197751200 Weak transcription Hela-S3 cervix
25 chr1:197746200-197747600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
26 chr1:197746200-197747800 Weak transcription Primary T killer naive cells fromperipheralblood blood
27 chr1:197746200-197750600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr1:197746200-197750600 Weak transcription NHEK skin
29 chr1:197746200-197751000 Weak transcription NHDF-Ad bronchial
30 chr1:197746200-197751000 Weak transcription Osteobl bone
31 chr1:197746200-197751200 Weak transcription Muscle Satellite Cultured Cells --
32 chr1:197746200-197751200 Weak transcription HMEC breast
33 chr1:197746400-197748000 Weak transcription Duodenum Mucosa Duodenum
34 chr1:197746400-197751000 Weak transcription Colonic Mucosa Colon
35 chr1:197746400-197751200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr1:197746600-197747600 Weak transcription Primary hematopoietic stem cells short term culture blood
37 chr1:197746600-197747600 Weak transcription Rectal Mucosa Donor 29 rectum
38 chr1:197746600-197747600 Enhancers GM12878-XiMat blood
39 chr1:197746600-197751200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr1:197747200-197747800 Enhancers Primary hematopoietic stem cells blood
41 chr1:197747200-197747800 Flanking Active TSS K562 blood
42 chr1:197747200-197748400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
43 chr1:197747400-197747800 Enhancers Primary T cells fromperipheralblood blood
44 chr1:197747400-197747800 Enhancers Primary Natural Killer cells fromperipheralblood blood
45 chr1:197747400-197747800 Flanking Active TSS Monocytes-CD14+_RO01746 blood
46 chr1:197747400-197748200 Enhancers Primary monocytes fromperipheralblood blood
47 chr1:197747400-197748200 Enhancers Primary B cells from peripheral blood blood
48 chr1:197747400-197748200 Enhancers Primary T helper naive cells fromperipheralblood blood
49 chr1:197747400-197748200 Enhancers Primary T helper cells fromperipheralblood blood

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Last update: Aug 31, 2015