Variant report

Variant	rs9727335
Chromosome Location	chr1:197536674-197536675
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:197536074..197537804-chr1:197566047..197569001,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11801895	1.00[AFR][1000 genomes]
rs11802251	1.00[AFR][1000 genomes]
rs11802844	1.00[YRI][hapmap]
rs11802940	1.00[AFR][1000 genomes]
rs11802964	1.00[AFR][1000 genomes]
rs11803371	1.00[AFR][1000 genomes]
rs11803914	1.00[AFR][1000 genomes]
rs11804057	1.00[AFR][1000 genomes]
rs11804072	1.00[AFR][1000 genomes]
rs11804259	1.00[AFR][1000 genomes]
rs11805327	1.00[AFR][1000 genomes]
rs11805399	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11805755	0.91[AFR][1000 genomes]
rs11805812	1.00[AFR][1000 genomes]
rs11805909	1.00[AFR][1000 genomes]
rs11806221	1.00[AFR][1000 genomes]
rs11806385	1.00[AFR][1000 genomes]
rs11806492	1.00[AFR][1000 genomes]
rs11806557	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11806645	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11806651	1.00[AFR][1000 genomes]
rs11806821	1.00[AFR][1000 genomes]
rs11806872	1.00[AFR][1000 genomes]
rs11807717	1.00[AFR][1000 genomes]
rs11808659	0.83[YRI][hapmap];0.81[AFR][1000 genomes]
rs11810711	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11811376	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2488386	0.90[EUR][1000 genomes]
rs3888103	0.83[YRI][hapmap]
rs6428399	0.83[YRI][hapmap]
rs6428400	0.83[YRI][hapmap]
rs6657488	1.00[AFR][1000 genomes]
rs6666890	1.00[AFR][1000 genomes]
rs6667162	0.83[YRI][hapmap]
rs6667565	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6698391	1.00[AFR][1000 genomes]
rs6703514	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6703515	1.00[AFR][1000 genomes]
rs7522037	1.00[AFR][1000 genomes]
rs7533154	1.00[AFR][1000 genomes]
rs7535981	1.00[AFR][1000 genomes]
rs7543290	1.00[AFR][1000 genomes]
rs7554788	1.00[AFR][1000 genomes]
rs9661515	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873074	chr1:197464448-197698103	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv873075	chr1:197464448-197714851	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv548872	chr1:197529218-197644581	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv873076	chr1:197529218-197689967	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197478000-197541200	Weak transcription	Aorta	Aorta
2	chr1:197480200-197541200	Weak transcription	Esophagus	oesophagus
3	chr1:197480200-197541200	Weak transcription	Fetal Thymus	thymus
4	chr1:197480400-197541200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:197503200-197541200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:197505600-197541000	Weak transcription	Pancreas	Pancrea
7	chr1:197506600-197537600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr1:197506800-197564600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr1:197508400-197602400	Weak transcription	Left Ventricle	heart
10	chr1:197525400-197541200	Weak transcription	Ovary	ovary
11	chr1:197526800-197563000	Weak transcription	Osteobl	bone
12	chr1:197529600-197541400	Weak transcription	Colonic Mucosa	Colon
13	chr1:197529800-197548800	Weak transcription	Right Ventricle	heart
14	chr1:197530800-197541200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:197533400-197540200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr1:197535600-197537400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
17	chr1:197535600-197537800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
18	chr1:197535600-197538400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr1:197535600-197538800	ZNF genes & repeats	Dnd41	blood
20	chr1:197535600-197542200	Weak transcription	Small Intestine	intestine
21	chr1:197535800-197536800	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr1:197535800-197536800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
23	chr1:197535800-197537000	ZNF genes & repeats	Primary T cells from cord blood	blood
24	chr1:197535800-197537000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
25	chr1:197535800-197537800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr1:197535800-197538200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr1:197535800-197538600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr1:197535800-197539000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr1:197535800-197539000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
30	chr1:197536000-197536800	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr1:197536000-197537400	ZNF genes & repeats	Fetal Lung	lung
32	chr1:197536000-197538400	ZNF genes & repeats	Liver	Liver
33	chr1:197536200-197541000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr1:197536400-197537000	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr1:197536400-197537200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
36	chr1:197536600-197536800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
37	chr1:197536600-197537000	ZNF genes & repeats	NHDF-Ad	bronchial
38	chr1:197536600-197537400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood

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