The 2.0 version of rSNPBase

Variant report

Variant rs11805909
Chromosome Location chr1:197540672-197540673
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:197478000-197541200 Weak transcription Aorta Aorta
2 chr1:197480200-197541200 Weak transcription Esophagus oesophagus
3 chr1:197480200-197541200 Weak transcription Fetal Thymus thymus
4 chr1:197480400-197541200 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr1:197503200-197541200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
6 chr1:197505600-197541000 Weak transcription Pancreas Pancrea
7 chr1:197506800-197564600 Weak transcription Primary T killer memory cells from peripheral blood blood
8 chr1:197508400-197602400 Weak transcription Left Ventricle heart
9 chr1:197525400-197541200 Weak transcription Ovary ovary
10 chr1:197526800-197563000 Weak transcription Osteobl bone
11 chr1:197529600-197541400 Weak transcription Colonic Mucosa Colon
12 chr1:197529800-197548800 Weak transcription Right Ventricle heart
13 chr1:197530800-197541200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr1:197535600-197542200 Weak transcription Small Intestine intestine
15 chr1:197536200-197541000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr1:197537000-197574600 Weak transcription NHDF-Ad bronchial
17 chr1:197537200-197541200 Weak transcription Primary neutrophils fromperipheralblood blood
18 chr1:197537200-197541800 Weak transcription Cortex derived primary cultured neurospheres brain
19 chr1:197537200-197548600 Weak transcription Adipose Nuclei Adipose
20 chr1:197537400-197541200 Weak transcription Primary monocytes fromperipheralblood blood
21 chr1:197537400-197541200 Weak transcription Rectal Mucosa Donor 31 rectum
22 chr1:197537400-197550400 Weak transcription Fetal Lung lung
23 chr1:197537400-197602200 Weak transcription Primary T helper naive cells fromperipheralblood blood
24 chr1:197537800-197546000 Weak transcription Primary T regulatory cells fromperipheralblood blood
25 chr1:197537800-197550400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr1:197537800-197585600 Weak transcription Primary T helper cells PMA-I stimulated --
27 chr1:197538000-197540800 Weak transcription Duodenum Mucosa Duodenum
28 chr1:197538000-197546800 Weak transcription Skeletal Muscle Female skeletal muscle
29 chr1:197538000-197554000 Weak transcription Colon Smooth Muscle Colon
30 chr1:197538200-197541000 Weak transcription Fetal Intestine Small intestine
31 chr1:197538200-197541200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr1:197538200-197544400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr1:197538400-197541200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
34 chr1:197538600-197540800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
35 chr1:197538600-197540800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
36 chr1:197538600-197563600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
37 chr1:197538800-197548600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
38 chr1:197539000-197541000 Weak transcription Fetal Intestine Large intestine
39 chr1:197539000-197541200 Weak transcription Fetal Adrenal Gland Adrenal Gland
40 chr1:197539000-197541400 Weak transcription Fetal Muscle Leg muscle
41 chr1:197539000-197543000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr1:197539000-197544200 Weak transcription Fetal Brain Female brain
43 chr1:197539000-197545400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr1:197539000-197545800 Weak transcription Primary T cells fromperipheralblood blood
45 chr1:197539000-197554400 Weak transcription Primary B cells from peripheral blood blood
46 chr1:197539000-197556600 Weak transcription Fetal Kidney kidney
47 chr1:197539200-197541200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
48 chr1:197539200-197541200 Weak transcription Gastric stomach
49 chr1:197539200-197545200 Weak transcription Rectal Smooth Muscle rectum
50 chr1:197539600-197541800 Strong transcription Duodenum Smooth Muscle Duodenum

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Last update: Aug 31, 2015