The 2.0 version of rSNPBase

Variant report

Variant rs11809987
Chromosome Location chr1:197615325-197615326
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:60 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:197542000-197626400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr1:197553000-197629800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
3 chr1:197593600-197628400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
4 chr1:197596600-197644800 Weak transcription Ovary ovary
5 chr1:197598800-197628600 Weak transcription NHDF-Ad bronchial
6 chr1:197599200-197628600 Weak transcription Primary T helper naive cells from peripheral blood blood
7 chr1:197602800-197625000 Weak transcription Primary hematopoietic stem cells blood
8 chr1:197602800-197641400 Weak transcription Primary B cells from peripheral blood blood
9 chr1:197603000-197620400 Weak transcription Primary T helper naive cells fromperipheralblood blood
10 chr1:197603000-197621200 Weak transcription Stomach Smooth Muscle stomach
11 chr1:197603000-197625200 Weak transcription Thymus Thymus
12 chr1:197603000-197627800 Weak transcription Skeletal Muscle Male skeletal muscle
13 chr1:197603000-197628600 Weak transcription Duodenum Smooth Muscle Duodenum
14 chr1:197603000-197632400 Weak transcription Fetal Lung lung
15 chr1:197603000-197632600 Weak transcription Small Intestine intestine
16 chr1:197603200-197625000 Weak transcription Breast Myoepithelial Primary Cells Breast
17 chr1:197603200-197625200 Weak transcription Left Ventricle heart
18 chr1:197603200-197626600 Weak transcription Fetal Stomach stomach
19 chr1:197603200-197628400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
20 chr1:197603200-197645000 Weak transcription Esophagus oesophagus
21 chr1:197603400-197618000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr1:197603400-197624800 Weak transcription Right Ventricle heart
23 chr1:197603400-197643400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
24 chr1:197604000-197626400 Weak transcription Rectal Mucosa Donor 29 rectum
25 chr1:197604000-197628200 Weak transcription Liver Liver
26 chr1:197604200-197635200 Weak transcription Aorta Aorta
27 chr1:197604600-197626400 Weak transcription Primary T cells from cord blood blood
28 chr1:197607800-197622800 Weak transcription NH-A brain
29 chr1:197608400-197628400 Weak transcription Primary T killer naive cells fromperipheralblood blood
30 chr1:197608600-197631400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
31 chr1:197609000-197628000 Weak transcription Fetal Kidney kidney
32 chr1:197609600-197621600 Weak transcription Skeletal Muscle Female skeletal muscle
33 chr1:197610200-197626200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
34 chr1:197610200-197640000 Weak transcription Fetal Intestine Small intestine
35 chr1:197610600-197622400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
36 chr1:197610800-197621000 Weak transcription Primary T helper cells PMA-I stimulated --
37 chr1:197611800-197644800 Weak transcription Primary monocytes fromperipheralblood blood
38 chr1:197612000-197619400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr1:197612000-197622600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
40 chr1:197612000-197628200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr1:197612000-197628400 Weak transcription Adipose Nuclei Adipose
42 chr1:197612200-197619400 Weak transcription Dnd41 blood
43 chr1:197612200-197642200 Weak transcription Primary B cells from cord blood blood
44 chr1:197612400-197628600 Weak transcription Brain Inferior Temporal Lobe brain
45 chr1:197612400-197628600 Weak transcription Fetal Thymus thymus
46 chr1:197612600-197628000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr1:197612800-197616000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
48 chr1:197612800-197626400 Weak transcription Primary hematopoietic stem cells short term culture blood
49 chr1:197612800-197644800 Weak transcription Fetal Intestine Large intestine
50 chr1:197612800-197645000 Weak transcription Sigmoid Colon Sigmoid Colon

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Last update: Aug 31, 2015