Variant report

Variant	rs6713504
Chromosome Location	chr2:98570387-98570388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:98561365..98564019-chr2:98567762..98570732,2	K562	blood:

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10167772	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10168543	0.80[EUR][1000 genomes]
rs10168709	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10169155	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10175129	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10176826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10180434	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10180837	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10183768	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10184393	0.81[ASN][1000 genomes]
rs10184457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10184552	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10188497	0.80[EUR][1000 genomes]
rs10188713	1.00[CEU][hapmap];0.85[CHB][hapmap];0.80[EUR][1000 genomes]
rs10189414	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10191101	0.85[CHB][hapmap]
rs10192322	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10206684	0.84[EUR][1000 genomes]
rs10208070	0.86[EUR][1000 genomes]
rs10209970	0.85[CHB][hapmap]
rs10210299	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10210880	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1024086	0.85[CHB][hapmap]
rs11893437	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11894541	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11895170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11897301	0.80[EUR][1000 genomes]
rs12712147	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12712162	0.83[EUR][1000 genomes]
rs12712163	0.84[EUR][1000 genomes]
rs12712172	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12992955	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13000585	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13008678	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13008904	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13009300	1.00[ASN][1000 genomes]
rs13012645	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13387725	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13404788	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13427422	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1446327	0.80[EUR][1000 genomes]
rs1503202	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1960329	1.00[CEU][hapmap];0.84[CHB][hapmap];0.80[EUR][1000 genomes]
rs1982336	0.89[CEU][hapmap];0.85[CHB][hapmap]
rs2121271	0.85[CHB][hapmap]
rs2293679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2305142	0.85[CEU][hapmap]
rs35203092	0.81[EUR][1000 genomes]
rs35402416	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35776557	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35807655	0.84[EUR][1000 genomes]
rs35940587	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36079497	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3821053	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs55817781	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6543088	0.85[CHB][hapmap]
rs6707719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6707750	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6712078	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[EUR][1000 genomes]
rs6718982	1.00[CEU][hapmap];0.85[CHB][hapmap];0.97[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6721323	0.89[CEU][hapmap];0.85[CHB][hapmap]
rs6721467	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6751727	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6756969	0.90[EUR][1000 genomes]
rs6760008	0.85[CHB][hapmap]
rs6875	0.85[CHB][hapmap]
rs7557495	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7578638	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7588227	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7591374	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7594928	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7595039	0.80[EUR][1000 genomes]
rs7599043	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7605288	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9784011	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9808558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526360	chr2:98403683-98814054	Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv521568	chr2:98403683-98826203	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1004220	chr2:98423421-98816010	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1007259	chr2:98429744-98818080	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv535832	chr2:98429744-98818080	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1009218	chr2:98442640-98816010	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1003925	chr2:98442640-98821102	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv999442	chr2:98448732-98816010	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1013902	chr2:98454309-98818080	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv1013416	chr2:98472701-98688729	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98562200-98570400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr2:98563400-98570600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr2:98563600-98589200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:98564600-98580600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:98566200-98570600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr2:98566600-98571000	Enhancers	Primary B cells from peripheral blood	blood
7	chr2:98567000-98570400	Enhancers	GM12878-XiMat	blood
8	chr2:98567000-98574400	Weak transcription	Lung	lung
9	chr2:98567200-98574200	Weak transcription	Small Intestine	intestine
10	chr2:98567400-98574000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr2:98567600-98570800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr2:98567600-98586600	Weak transcription	Fetal Stomach	stomach
13	chr2:98568000-98570600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr2:98568000-98571800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr2:98568000-98574000	Weak transcription	Brain Substantia Nigra	brain
16	chr2:98568000-98574400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr2:98568000-98574400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr2:98568000-98574400	Weak transcription	Ovary	ovary
19	chr2:98568000-98574400	Weak transcription	Spleen	Spleen
20	chr2:98568000-98578200	Weak transcription	Brain Anterior Caudate	brain
21	chr2:98568000-98583000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr2:98568200-98570600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr2:98568200-98573200	Weak transcription	Left Ventricle	heart
24	chr2:98568200-98573800	Weak transcription	Liver	Liver
25	chr2:98568200-98574200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr2:98568200-98574400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr2:98568200-98574400	Weak transcription	Pancreas	Pancrea
28	chr2:98568200-98574400	Weak transcription	Psoas Muscle	Psoas
29	chr2:98568200-98574400	Weak transcription	Right Atrium	heart
30	chr2:98568200-98580800	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr2:98568200-98599200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr2:98568400-98570600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr2:98568400-98570800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr2:98568400-98573600	Weak transcription	HMEC	breast
35	chr2:98568400-98574200	Weak transcription	HSMM	muscle
36	chr2:98568400-98574400	Weak transcription	Gastric	stomach
37	chr2:98568400-98586600	Weak transcription	Aorta	Aorta
38	chr2:98568400-98592000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr2:98569200-98574000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr2:98569200-98574000	Weak transcription	NHEK	skin
41	chr2:98569200-98574200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr2:98569200-98574200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr2:98569200-98574400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr2:98569200-98579400	Weak transcription	Esophagus	oesophagus
45	chr2:98569200-98579600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr2:98569200-98580600	Weak transcription	NHDF-Ad	bronchial
47	chr2:98569200-98581400	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr2:98569400-98574200	Weak transcription	Placenta	Placenta
49	chr2:98569800-98571200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr2:98569800-98572200	Enhancers	Primary T helper cells PMA-I stimulated	--

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