Variant report

Variant	rs10210880
Chromosome Location	chr2:98600082-98600083
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:98599318..98603121-chr2:98611539..98613337,3	K562	blood:

Variant related genes	Relation type
ENSG00000075568	Chromatin interaction

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10166513	0.94[ASN][1000 genomes]
rs10167772	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10168543	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10168709	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10175129	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10176826	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10180434	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10183768	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10184457	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10184552	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10188497	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10188713	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10189414	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10191101	0.94[ASN][1000 genomes]
rs10202138	0.94[ASN][1000 genomes]
rs10206684	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10208070	0.82[EUR][1000 genomes]
rs10209970	1.00[ASN][1000 genomes]
rs10210299	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10210520	0.88[ASN][1000 genomes]
rs1024086	0.81[ASN][1000 genomes]
rs11886417	1.00[ASN][1000 genomes]
rs11893437	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11894541	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11894895	0.88[ASN][1000 genomes]
rs11895170	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11897301	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12712117	0.88[ASN][1000 genomes]
rs12712120	0.88[ASN][1000 genomes]
rs12712147	0.82[AFR][1000 genomes]
rs12712162	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12712163	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12712172	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12992955	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13000585	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13008678	0.83[EUR][1000 genomes]
rs13008904	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13010004	0.88[ASN][1000 genomes]
rs13012645	0.81[EUR][1000 genomes]
rs13387725	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13404788	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13427422	0.82[EUR][1000 genomes]
rs1446327	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1503202	0.85[EUR][1000 genomes]
rs1960329	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1982336	0.88[ASN][1000 genomes]
rs2121271	0.88[ASN][1000 genomes]
rs34190123	0.94[ASN][1000 genomes]
rs34414288	0.88[ASN][1000 genomes]
rs34469351	0.97[ASN][1000 genomes]
rs35185431	0.88[ASN][1000 genomes]
rs35203092	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35402416	0.81[EUR][1000 genomes]
rs35776557	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35807655	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35940587	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36079497	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3821053	0.88[ASN][1000 genomes]
rs55753459	0.94[ASN][1000 genomes]
rs55817781	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6543111	0.85[ASN][1000 genomes]
rs6707719	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6707750	0.82[EUR][1000 genomes]
rs6712078	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6713504	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6718982	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6721323	0.82[ASN][1000 genomes]
rs6721467	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6728312	0.88[ASN][1000 genomes]
rs6738401	0.94[ASN][1000 genomes]
rs6751727	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6755021	0.94[ASN][1000 genomes]
rs6756969	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6760008	0.88[ASN][1000 genomes]
rs68115667	1.00[ASN][1000 genomes]
rs71429373	0.94[ASN][1000 genomes]
rs718159	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7557495	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7570009	0.88[ASN][1000 genomes]
rs7578638	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7582298	0.94[ASN][1000 genomes]
rs7588227	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7593290	0.88[ASN][1000 genomes]
rs7594928	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7595039	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7599043	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7605288	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9784011	0.85[EUR][1000 genomes]
rs9808558	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9973490	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526360	chr2:98403683-98814054	Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv521568	chr2:98403683-98826203	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1004220	chr2:98423421-98816010	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1007259	chr2:98429744-98818080	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv535832	chr2:98429744-98818080	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1009218	chr2:98442640-98816010	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1003925	chr2:98442640-98821102	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv999442	chr2:98448732-98816010	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1013902	chr2:98454309-98818080	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv1013416	chr2:98472701-98688729	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv518056	chr2:98586842-99156296	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98585000-98608400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr2:98592200-98606200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr2:98592600-98603000	Weak transcription	Ovary	ovary
4	chr2:98592600-98604600	Weak transcription	Fetal Brain Male	brain
5	chr2:98593200-98606400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr2:98594600-98602600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr2:98595800-98606400	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr2:98596000-98609400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr2:98596200-98607800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr2:98596200-98607800	Weak transcription	Lung	lung
11	chr2:98596400-98600400	Weak transcription	Adipose Nuclei	Adipose
12	chr2:98596400-98602400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr2:98596600-98602600	Weak transcription	HMEC	breast
14	chr2:98596800-98608400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr2:98597000-98600200	Weak transcription	Fetal Lung	lung
16	chr2:98597000-98602800	Weak transcription	Dnd41	blood
17	chr2:98597000-98605600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr2:98597000-98609800	Weak transcription	Fetal Stomach	stomach
19	chr2:98597200-98604600	Weak transcription	Primary T cells from cord blood	blood
20	chr2:98597400-98601000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr2:98597400-98601600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr2:98597400-98602600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr2:98597800-98602400	Weak transcription	Fetal Muscle Trunk	muscle
24	chr2:98598000-98600200	Strong transcription	Primary B cells from cord blood	blood
25	chr2:98598200-98607800	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr2:98598400-98600400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr2:98598600-98600400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr2:98598600-98603000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr2:98598600-98604200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr2:98598600-98606200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr2:98598600-98610400	Weak transcription	Placenta	Placenta
32	chr2:98599000-98600400	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr2:98599000-98600600	Enhancers	NHDF-Ad	bronchial
34	chr2:98599000-98601000	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr2:98599000-98602800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr2:98599200-98600200	Enhancers	Fetal Muscle Leg	muscle
37	chr2:98599200-98600200	Genic enhancers	Left Ventricle	heart
38	chr2:98599200-98600400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr2:98599200-98600400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr2:98599200-98600400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr2:98599200-98600400	Enhancers	Placenta Amnion	Placenta Amnion
42	chr2:98599200-98600600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr2:98599200-98600600	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr2:98599200-98601200	Enhancers	Psoas Muscle	Psoas
45	chr2:98599400-98600200	Enhancers	H1 Cell Line	embryonic stem cell
46	chr2:98599400-98600200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr2:98599400-98600200	Enhancers	Right Ventricle	heart
48	chr2:98599400-98600200	Enhancers	Small Intestine	intestine
49	chr2:98599400-98600400	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr2:98599400-98600400	Enhancers	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links