Variant report

Variant	rs10202138
Chromosome Location	chr2:98540460-98540461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10166513	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10167772	1.00[ASN][1000 genomes]
rs10168543	0.94[ASN][1000 genomes]
rs10175129	1.00[ASN][1000 genomes]
rs10180434	1.00[ASN][1000 genomes]
rs10180722	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10183768	1.00[ASN][1000 genomes]
rs10187061	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10188497	0.94[ASN][1000 genomes]
rs10188713	0.94[ASN][1000 genomes]
rs10189414	1.00[ASN][1000 genomes]
rs10191101	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10206684	1.00[ASN][1000 genomes]
rs10209970	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10210520	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10210880	0.94[ASN][1000 genomes]
rs11886417	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11893437	0.97[ASN][1000 genomes]
rs11894541	1.00[ASN][1000 genomes]
rs11894895	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11897301	0.94[ASN][1000 genomes]
rs12712117	0.94[ASN][1000 genomes]
rs12712120	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12712162	0.94[ASN][1000 genomes]
rs12712163	0.87[ASN][1000 genomes]
rs12712172	1.00[ASN][1000 genomes]
rs12992955	1.00[ASN][1000 genomes]
rs13000585	1.00[ASN][1000 genomes]
rs13004862	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13008904	1.00[ASN][1000 genomes]
rs13009300	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13010004	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1446327	0.94[ASN][1000 genomes]
rs1960329	0.94[ASN][1000 genomes]
rs1982336	0.94[ASN][1000 genomes]
rs2121271	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34190123	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34305873	0.85[ASN][1000 genomes]
rs34414288	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34469351	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35185431	0.94[ASN][1000 genomes]
rs35203092	0.94[ASN][1000 genomes]
rs35589428	0.87[AMR][1000 genomes]
rs35776557	0.97[ASN][1000 genomes]
rs35807655	1.00[ASN][1000 genomes]
rs35940587	0.94[ASN][1000 genomes]
rs36079497	0.94[ASN][1000 genomes]
rs3821053	0.94[ASN][1000 genomes]
rs55753459	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6543088	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6543111	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6712078	0.94[ASN][1000 genomes]
rs6718982	0.94[ASN][1000 genomes]
rs6721323	0.88[ASN][1000 genomes]
rs6728312	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6738401	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6751727	1.00[ASN][1000 genomes]
rs6755021	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6756969	0.94[ASN][1000 genomes]
rs6760008	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68115667	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6875	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71429373	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs718159	0.94[ASN][1000 genomes]
rs7557495	1.00[ASN][1000 genomes]
rs7570009	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7578638	0.94[ASN][1000 genomes]
rs7582298	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7588227	0.94[ASN][1000 genomes]
rs7593290	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7594928	1.00[ASN][1000 genomes]
rs7595039	0.94[ASN][1000 genomes]
rs7599043	1.00[ASN][1000 genomes]
rs7605288	0.94[ASN][1000 genomes]
rs9973490	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526360	chr2:98403683-98814054	Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv521568	chr2:98403683-98826203	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1004220	chr2:98423421-98816010	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1007259	chr2:98429744-98818080	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv535832	chr2:98429744-98818080	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1009218	chr2:98442640-98816010	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1003925	chr2:98442640-98821102	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv999442	chr2:98448732-98816010	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1013902	chr2:98454309-98818080	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv1013416	chr2:98472701-98688729	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98504000-98540600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr2:98504000-98540800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr2:98504600-98540800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr2:98504600-98552200	Weak transcription	NHLF	lung
5	chr2:98515800-98540800	Weak transcription	Aorta	Aorta
6	chr2:98519600-98541600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr2:98520200-98546000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr2:98520200-98552200	Weak transcription	Brain Angular Gyrus	brain
9	chr2:98520600-98550600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr2:98523200-98540600	Weak transcription	Right Ventricle	heart
11	chr2:98523400-98540600	Weak transcription	Fetal Brain Female	brain
12	chr2:98523400-98545800	Weak transcription	Fetal Kidney	kidney
13	chr2:98523400-98546200	Weak transcription	HUVEC	blood vessel
14	chr2:98524600-98552600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr2:98524800-98540800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr2:98524800-98552200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr2:98525000-98540600	Weak transcription	Adipose Nuclei	Adipose
18	chr2:98525000-98551600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr2:98525200-98547400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr2:98525600-98548200	Weak transcription	Pancreas	Pancrea
21	chr2:98525800-98540800	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr2:98527800-98540800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr2:98528600-98550600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr2:98528800-98541000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr2:98528800-98541000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr2:98529000-98552200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr2:98529200-98540600	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr2:98529200-98540600	Weak transcription	Stomach Mucosa	stomach
29	chr2:98529400-98540600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr2:98529400-98540600	Weak transcription	Primary hematopoietic stem cells	blood
31	chr2:98529400-98540800	Weak transcription	Liver	Liver
32	chr2:98529400-98541600	Weak transcription	Osteobl	bone
33	chr2:98530400-98540800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr2:98530400-98541400	Weak transcription	Small Intestine	intestine
35	chr2:98531000-98540600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr2:98531000-98552400	Weak transcription	Right Atrium	heart
37	chr2:98531200-98540600	Weak transcription	Thymus	Thymus
38	chr2:98531200-98552200	Weak transcription	Fetal Thymus	thymus
39	chr2:98531600-98540800	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr2:98531600-98540800	Weak transcription	Dnd41	blood
41	chr2:98531600-98546000	Weak transcription	Colon Smooth Muscle	Colon
42	chr2:98531600-98548200	Weak transcription	K562	blood
43	chr2:98532200-98541200	Weak transcription	NHDF-Ad	bronchial
44	chr2:98532800-98540600	Weak transcription	Fetal Muscle Trunk	muscle
45	chr2:98533000-98547600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr2:98533200-98540800	Weak transcription	Fetal Lung	lung
47	chr2:98533800-98546000	Weak transcription	Fetal Heart	heart
48	chr2:98533800-98552000	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr2:98534000-98540800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr2:98534200-98540600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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